Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20640

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,451,256	+		DZA65_RS20630	0.45	-0.8
4,451,257	-		DZA65_RS20630	0.45	-0.8
4,451,257	-		DZA65_RS20630	0.45	+1.9
4,451,304	+		DZA65_RS20630	0.53	-0.3
4,451,305	-		DZA65_RS20630	0.53	-1.1
4,451,305	-		DZA65_RS20630	0.53	-1.7
4,451,343	+		DZA65_RS20630	0.59	+1.4
4,451,343	+		DZA65_RS20630	0.59	-2.1
4,451,343	+		DZA65_RS20630	0.59	+2.3
4,451,343	+		DZA65_RS20630	0.59	+0.2
4,451,343	+		DZA65_RS20630	0.59	+0.2
4,451,343	+		DZA65_RS20630	0.59	-0.6
4,451,343	+		DZA65_RS20630	0.59	-1.0
4,451,343	+		DZA65_RS20630	0.59	+0.9
4,451,343	+		DZA65_RS20630	0.59	+0.5
4,451,343	+		DZA65_RS20630	0.59	-0.5
4,451,343	+		DZA65_RS20630	0.59	+2.1
4,451,343	+		DZA65_RS20630	0.59	+0.9
4,451,343	+		DZA65_RS20630	0.59	-0.8
4,451,343	+		DZA65_RS20630	0.59	-1.1
4,451,343	+		DZA65_RS20630	0.59	-0.4
4,451,344	-		DZA65_RS20630	0.59	+2.3
4,451,344	-		DZA65_RS20630	0.59	-1.4
4,451,344	-		DZA65_RS20630	0.59	-1.0
4,451,344	-		DZA65_RS20630	0.59	+0.2
4,451,344	-		DZA65_RS20630	0.59	+0.1
4,451,344	-		DZA65_RS20630	0.59	+0.2
4,451,344	-		DZA65_RS20630	0.59	-3.0
4,451,344	-		DZA65_RS20630	0.59	+3.5
4,451,344	-		DZA65_RS20630	0.59	-1.3
4,451,344	-		DZA65_RS20630	0.59	-0.9
4,451,344	-		DZA65_RS20630	0.59	+2.8
4,451,344	-		DZA65_RS20630	0.59	-1.4
4,451,344	-		DZA65_RS20630	0.59	+2.0
4,451,386	-		DZA65_RS20630	0.66	+1.2
4,451,470	+		DZA65_RS20630	0.80	-0.6
4,451,470	+		DZA65_RS20630	0.80	+1.1
4,451,470	+		DZA65_RS20630	0.80	-0.8
4,451,470	+		DZA65_RS20630	0.80	-1.0
4,451,470	+		DZA65_RS20630	0.80	-1.0
4,451,470	+		DZA65_RS20630	0.80	+2.0
4,451,470	+		DZA65_RS20630	0.80	+0.2
4,451,471	-		DZA65_RS20630	0.80	-0.8
4,451,471	-		DZA65_RS20630	0.80	-1.0
4,451,471	-		DZA65_RS20630	0.80	-1.4
4,451,481	-		DZA65_RS20630	0.82	-2.7
4,451,506	+		DZA65_RS20630	0.86	+1.8
4,451,506	+		DZA65_RS20630	0.86	-1.4
4,451,507	-		DZA65_RS20630	0.86	-2.8
4,451,507	-		DZA65_RS20630	0.86	-0.6
4,451,507	-		DZA65_RS20630	0.86	+0.3
4,451,507	-		DZA65_RS20630	0.86	-1.4
4,451,510	+		DZA65_RS20630	0.87	-0.5
4,451,510	+		DZA65_RS20630	0.87	+1.9
4,451,510	+		DZA65_RS20630	0.87	+3.3
4,451,510	+		DZA65_RS20630	0.87	+1.9
4,451,510	+		DZA65_RS20630	0.87	-0.7
4,451,510	+		DZA65_RS20630	0.87	-0.7
4,451,510	+		DZA65_RS20630	0.87	+1.2
4,451,510	+		DZA65_RS20630	0.87	+0.4
4,451,510	+		DZA65_RS20630	0.87	+2.2
4,451,510	+		DZA65_RS20630	0.87	+1.2
4,451,510	+		DZA65_RS20630	0.87	+1.4
4,451,510	+		DZA65_RS20630	0.87	-2.0
4,451,510	+		DZA65_RS20630	0.87	-3.2
4,451,511	-		DZA65_RS20630	0.87	+0.7
4,451,511	-		DZA65_RS20630	0.87	-1.2
4,451,511	-		DZA65_RS20630	0.87	-1.8
4,451,511	-		DZA65_RS20630	0.87	-1.8
4,451,511	-		DZA65_RS20630	0.87	+1.9
4,451,511	-		DZA65_RS20630	0.87	+0.9
4,451,511	-		DZA65_RS20630	0.87	-1.8
4,451,511	-		DZA65_RS20630	0.87	+0.8
4,451,511	-		DZA65_RS20630	0.87	+2.5
4,451,511	-		DZA65_RS20630	0.87	-2.1
4,451,511	-		DZA65_RS20630	0.87	+0.8
4,451,511	-		DZA65_RS20630	0.87	-1.0
4,451,511	-		DZA65_RS20630	0.87	+0.6
4,451,515	+		DZA65_RS20630	0.87	-1.1
4,451,515	+		DZA65_RS20630	0.87	-0.8
4,451,515	+		DZA65_RS20630	0.87	-0.5
4,451,515	+		DZA65_RS20630	0.87	+1.2
4,451,515	+		DZA65_RS20630	0.87	+1.0
4,451,515	+		DZA65_RS20630	0.87	-0.2
4,451,515	+		DZA65_RS20630	0.87	+0.7
4,451,516	-		DZA65_RS20630	0.88	+0.9
4,451,516	-		DZA65_RS20630	0.88	-0.6
4,451,516	-		DZA65_RS20630	0.88	+0.6
4,451,516	-		DZA65_RS20630	0.88	+0.6
4,451,516	-		DZA65_RS20630	0.88	-2.4
4,451,516	-		DZA65_RS20630	0.88	-1.1
4,451,516	-		DZA65_RS20630	0.88	+1.2
4,451,516	-		DZA65_RS20630	0.88	+1.1
4,451,516	-		DZA65_RS20630	0.88	-1.8
4,451,516	-		DZA65_RS20630	0.88	-2.5
4,451,516	-		DZA65_RS20630	0.88	+3.2
4,451,516	-		DZA65_RS20630	0.88	+0.0
4,451,516	-		DZA65_RS20630	0.88	+2.2
4,451,516	-		DZA65_RS20630	0.88	-0.0
4,451,516	-		DZA65_RS20630	0.88	+0.2
4,451,516	-		DZA65_RS20630	0.88	-1.4
4,451,516	-		DZA65_RS20630	0.88	-0.6
4,451,516	-		DZA65_RS20630	0.88	+0.1
4,451,518	+		DZA65_RS20630	0.88	-1.6
4,451,518	+		DZA65_RS20630	0.88	+0.2
4,451,518	+		DZA65_RS20630	0.88	+0.2
4,451,519	-		DZA65_RS20630	0.88	+1.9
4,451,519	-		DZA65_RS20630	0.88	-0.4
4,451,628	+				-1.3
4,451,628	+				+0.2
4,451,628	+				-1.0
4,451,628	+				-2.4
4,451,629	-				-1.6
4,451,663	-				-0.6
4,451,663	-				-0.7
4,451,663	-				-1.0
4,451,663	-				+1.2
4,451,671	-				-0.1
4,451,724	+				+1.4
4,451,725	-				+1.2
4,451,730	+				+0.6
4,451,730	+				-1.0
4,451,730	+				-1.4
4,451,730	+				+0.4
4,451,730	+				+0.3
4,451,731	-				-0.3
4,451,731	-				-1.1
4,451,731	-				+0.5
4,451,731	-				-1.3
4,451,731	-				+0.1
4,451,731	-				-1.1
4,451,731	-				-0.0
4,451,745	+				+2.1
4,451,746	-				-2.0
4,451,781	+				+1.2
4,451,836	+				-0.8
4,451,836	+				-0.9
4,451,836	+				+1.7
4,451,837	-				-1.6
4,451,837	-				-0.1
4,451,837	-				-0.8
4,451,852	-				-2.0
4,451,859	+				+1.5
4,451,859	+				-1.4
4,451,859	+				-1.3
4,451,998	+		DZA65_RS20635	0.53	+1.8
4,451,998	+		DZA65_RS20635	0.53	+1.9
4,451,998	+				-1.8
4,451,999	-		DZA65_RS20635	0.53	-0.6
4,451,999	-		DZA65_RS20635	0.53	+1.2
4,451,999	-		DZA65_RS20635	0.53	-0.1
4,451,999	-		DZA65_RS20635	0.53	-0.4
4,452,000	+		DZA65_RS20635	0.54	+0.2
4,452,000	+		DZA65_RS20635	0.54	-1.1
4,452,000	+		DZA65_RS20635	0.54	-1.1
4,452,000	+		DZA65_RS20635	0.54	-0.4
4,452,000	+		DZA65_RS20635	0.54	+0.1
4,452,001	-		DZA65_RS20635	0.54	-0.4
4,452,001	-		DZA65_RS20635	0.54	+2.0
4,452,001	-		DZA65_RS20635	0.54	+1.0
4,452,001	-		DZA65_RS20635	0.54	+0.6
4,452,001	-		DZA65_RS20635	0.54	-0.6
4,452,001	-		DZA65_RS20635	0.54	-1.4
4,452,001	-		DZA65_RS20635	0.54	-1.4
4,452,001	-		DZA65_RS20635	0.54	+0.9
4,452,064	+		DZA65_RS20635	0.81	+0.8
4,452,064	+		DZA65_RS20635	0.81	+0.8
4,452,064	+		DZA65_RS20635	0.81	+0.5
4,452,064	+		DZA65_RS20635	0.81	+0.5
4,452,064	+		DZA65_RS20635	0.81	+0.5
4,452,064	+		DZA65_RS20635	0.81	+0.6
4,452,065	-		DZA65_RS20635	0.82	+0.4
4,452,101	+				+0.6
4,452,104	+				-0.2
4,452,104	+				-1.0
4,452,105	-				+1.0
4,452,124	-				+0.3
4,452,131	+				+1.3
4,452,132	-				+0.5
4,452,154	+				+1.2
4,452,155	-				+0.4
4,452,155	-				+0.5
4,452,155	-				+0.2
4,452,155	-				-0.3
4,452,155	-				+0.7
4,452,155	-				-1.2
4,452,163	+				-2.5
4,452,196	+				+1.2
4,452,212	+				+0.7
4,452,212	+				+1.8
4,452,213	-				+2.2
4,452,369	+		DZA65_RS20640	0.15	-0.8
4,452,369	+		DZA65_RS20640	0.15	-0.4
4,452,369	+		DZA65_RS20640	0.15	+0.5
4,452,369	+		DZA65_RS20640	0.15	+1.2
4,452,369	+		DZA65_RS20640	0.15	+0.2
4,452,370	-		DZA65_RS20640	0.15	-1.8
4,452,370	-		DZA65_RS20640	0.15	-0.3
4,452,370	-		DZA65_RS20640	0.15	-0.1
4,452,370	-		DZA65_RS20640	0.15	+1.2
4,452,370	-		DZA65_RS20640	0.15	+0.2
4,452,378	+		DZA65_RS20640	0.16	+0.6
4,452,378	+		DZA65_RS20640	0.16	+1.2
4,452,378	+				-1.6
4,452,378	+		DZA65_RS20640	0.16	+0.8
4,452,378	+		DZA65_RS20640	0.16	+0.7
4,452,379	-		DZA65_RS20640	0.16	-1.4
4,452,380	+				-1.1
4,452,441	+		DZA65_RS20640	0.23	-1.6
4,452,442	-		DZA65_RS20640	0.23	+1.8
4,452,528	+		DZA65_RS20640	0.33	-2.1
4,452,528	+		DZA65_RS20640	0.33	+2.2
4,452,529	-		DZA65_RS20640	0.33	+0.2
4,452,541	-		DZA65_RS20640	0.35	-1.0
4,452,541	-		DZA65_RS20640	0.35	-1.4
4,452,558	+		DZA65_RS20640	0.37	-1.6
4,452,558	+		DZA65_RS20640	0.37	-0.1
4,452,559	-		DZA65_RS20640	0.37	-0.2
4,452,559	-		DZA65_RS20640	0.37	-1.1
4,452,559	-		DZA65_RS20640	0.37	+0.3
4,452,559	-		DZA65_RS20640	0.37	-0.5
4,452,624	+		DZA65_RS20640	0.44	-0.4
4,452,624	+		DZA65_RS20640	0.44	-0.8
4,452,624	+		DZA65_RS20640	0.44	+2.2
4,452,624	+		DZA65_RS20640	0.44	+1.6
4,452,625	-		DZA65_RS20640	0.44	+0.6
4,452,653	+		DZA65_RS20640	0.47	-0.8
4,452,807	+		DZA65_RS20640	0.65	+2.7
4,452,807	+		DZA65_RS20640	0.65	+1.5
4,452,807	+		DZA65_RS20640	0.65	+0.9
4,452,807	+		DZA65_RS20640	0.65	-1.8
4,452,807	+		DZA65_RS20640	0.65	-2.3
4,452,807	+		DZA65_RS20640	0.65	-0.6
4,452,807	+		DZA65_RS20640	0.65	+1.1
4,452,807	+		DZA65_RS20640	0.65	+0.9
4,452,807	+		DZA65_RS20640	0.65	-2.0
4,452,808	-		DZA65_RS20640	0.65	-1.0
4,452,808	-		DZA65_RS20640	0.65	+0.7
4,452,808	-		DZA65_RS20640	0.65	+0.4
4,452,808	-		DZA65_RS20640	0.65	-0.4
4,452,808	-		DZA65_RS20640	0.65	-1.1
4,452,808	-		DZA65_RS20640	0.65	+0.2
4,452,808	-		DZA65_RS20640	0.65	-0.4
4,452,808	-		DZA65_RS20640	0.65	-1.6
4,452,808	-		DZA65_RS20640	0.65	+0.6
4,452,808	-		DZA65_RS20640	0.65	+1.5
4,452,808	-		DZA65_RS20640	0.65	-0.4
4,452,808	-		DZA65_RS20640	0.65	-2.7
4,452,808	-		DZA65_RS20640	0.65	-1.6
4,452,845	+		DZA65_RS20640	0.70	+1.4
4,452,871	+		DZA65_RS20640	0.73	-0.9
4,452,871	+		DZA65_RS20640	0.73	-0.8
4,452,871	+		DZA65_RS20640	0.73	+1.3
4,453,087	+				-2.0
4,453,087	+				-0.4
4,453,087	+				+0.6
4,453,087	+				+1.9
4,453,087	+				+0.2
4,453,087	+				-1.1
4,453,088	-				+0.5
4,453,100	+				+0.0
4,453,100	+				-0.2
4,453,100	+				-1.1
4,453,100	+				-2.1
4,453,100	+				+0.2
4,453,100	+				+0.2
4,453,101	-				-1.8
4,453,101	-				-0.5
4,453,101	-				-0.1
4,453,107	+				+2.4
4,453,160	-				+1.8
4,453,200	+		DZA65_RS20645	0.18	+1.7
4,453,201	-		DZA65_RS20645	0.18	+2.5
4,453,267	+		DZA65_RS20645	0.34	-0.8
4,453,268	-		DZA65_RS20645	0.35	-1.4
4,453,268	-		DZA65_RS20645	0.35	-0.6
4,453,268	-		DZA65_RS20645	0.35	+1.2
4,453,268	-		DZA65_RS20645	0.35	+2.8
4,453,372	+		DZA65_RS20645	0.60	-1.1
4,453,372	+		DZA65_RS20645	0.60	+0.3
4,453,372	+		DZA65_RS20645	0.60	+0.6
4,453,372	+		DZA65_RS20645	0.60	+0.9
4,453,372	+		DZA65_RS20645	0.60	-0.8
4,453,372	+		DZA65_RS20645	0.60	-0.4
4,453,373	-		DZA65_RS20645	0.60	-1.6
4,453,373	-		DZA65_RS20645	0.60	+2.6
4,453,373	-		DZA65_RS20645	0.60	+0.7
4,453,373	-		DZA65_RS20645	0.60	+1.2
4,453,534	+				-1.5
4,453,577	+				+0.2
4,453,577	+				+0.7
4,453,577	+				-0.1
4,453,577	+				-1.8
4,453,578	-				-1.1
4,453,578	-				+0.2
4,453,578	-				+1.6
4,453,581	+				+3.7
4,453,582	-				+1.0
4,453,582	-				-0.8
4,453,582	-				+1.2
4,453,584	-				-3.2
4,453,584	-				+0.5
4,453,607	+				-1.1
4,453,607	+				+0.3
4,453,607	+				+1.2
4,453,607	+				-0.3
4,453,608	-				-0.4
4,453,608	-				-0.8
4,453,608	-				+0.5
4,453,608	-				+0.4
4,453,639	+				-0.4
4,453,639	+				-2.1
4,453,640	-				-2.2
4,453,681	+				-2.4
4,453,681	+				+1.2
4,453,681	+				-0.1
4,453,681	+				+0.2
4,453,681	+				+1.8
4,453,741	+				+0.8
4,453,743	+				+1.2
4,453,786	+				-0.1
4,453,786	+				-1.8
4,453,786	+				-0.4
4,453,786	+				+0.7
4,453,786	+				-1.9
4,453,791	+				-2.4
4,453,791	+				+0.4
4,453,801	+				-1.6
4,453,801	+				-1.1
4,453,839	+				-0.8