Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17270

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,723,029	+		DZA65_RS17260	0.83	+0.1
3,723,029	+		DZA65_RS17260	0.83	-2.0
3,723,067	+		DZA65_RS17260	0.89	-1.3
3,723,075	+		DZA65_RS17260	0.90	-0.6
3,723,075	+		DZA65_RS17260	0.90	+0.4
3,723,075	+		DZA65_RS17260	0.90	-1.5
3,723,075	+		DZA65_RS17260	0.90	-0.0
3,723,075	+		DZA65_RS17260	0.90	+0.8
3,723,076	-				+0.0
3,723,076	-				-1.6
3,723,076	-				-0.6
3,723,076	-				-1.6
3,723,076	-				-1.8
3,723,076	-				+3.0
3,723,078	+				+0.4
3,723,078	+				-1.6
3,723,078	+				-1.7
3,723,079	-				-0.0
3,723,079	-				-0.3
3,723,079	-				+1.0
3,723,079	-				-1.0
3,723,079	-				-1.3
3,723,079	-				+0.1
3,723,079	-				-0.3
3,723,106	+				-1.0
3,723,106	+				-0.0
3,723,106	+				+2.2
3,723,106	+				+1.0
3,723,106	+				-1.0
3,723,107	-				-0.6
3,723,107	-				+0.5
3,723,107	-				+1.8
3,723,153	+				+2.6
3,723,153	+				+2.2
3,723,153	+				+0.2
3,723,153	+				-2.5
3,723,153	+				-2.5
3,723,154	-				-0.0
3,723,154	-				+1.6
3,723,154	-				-0.2
3,723,154	-				+2.6
3,723,154	-				-0.8
3,723,154	-				+0.6
3,723,154	-				+0.6
3,723,156	+				-1.1
3,723,157	-				-1.6
3,723,157	-				-1.6
3,723,170	+				-0.2
3,723,170	+				+0.3
3,723,194	+				+2.0
3,723,195	-				-1.1
3,723,203	+				-2.5
3,723,203	+				-0.3
3,723,203	+				+0.4
3,723,203	+				-1.3
3,723,203	+				-0.5
3,723,204	-				+1.2
3,723,204	-				-1.8
3,723,231	+				+1.3
3,723,231	+				+0.3
3,723,231	+				+2.0
3,723,231	+				+1.0
3,723,231	+				+1.6
3,723,231	+				+1.0
3,723,231	+				-0.0
3,723,231	+				+1.0
3,723,232	-				-1.4
3,723,232	-				+0.1
3,723,232	-				+1.3
3,723,232	-				+0.2
3,723,232	-				+2.3
3,723,232	-				+1.3
3,723,232	-				-0.6
3,723,338	+		DZA65_RS17265	0.19	+1.4
3,723,409	+		DZA65_RS17265	0.28	-0.1
3,723,455	+		DZA65_RS17265	0.34	+1.6
3,723,455	+		DZA65_RS17265	0.34	-0.8
3,723,455	+		DZA65_RS17265	0.34	-1.3
3,723,455	+		DZA65_RS17265	0.34	+1.0
3,723,455	+		DZA65_RS17265	0.34	-1.0
3,723,455	+		DZA65_RS17265	0.34	-1.0
3,723,455	+		DZA65_RS17265	0.34	-3.8
3,723,455	+		DZA65_RS17265	0.34	-0.8
3,723,455	+		DZA65_RS17265	0.34	-1.9
3,723,455	+		DZA65_RS17265	0.34	-0.4
3,723,455	+		DZA65_RS17265	0.34	-1.3
3,723,455	+		DZA65_RS17265	0.34	+0.3
3,723,455	+		DZA65_RS17265	0.34	-1.6
3,723,455	+		DZA65_RS17265	0.34	-0.8
3,723,455	+		DZA65_RS17265	0.34	-0.1
3,723,455	+		DZA65_RS17265	0.34	-0.3
3,723,455	+		DZA65_RS17265	0.34	-0.2
3,723,455	+		DZA65_RS17265	0.34	+0.2
3,723,455	+		DZA65_RS17265	0.34	+0.2
3,723,456	-		DZA65_RS17265	0.35	+2.1
3,723,456	-		DZA65_RS17265	0.35	-1.8
3,723,456	-		DZA65_RS17265	0.35	+0.1
3,723,456	-		DZA65_RS17265	0.35	-1.3
3,723,456	-		DZA65_RS17265	0.35	-0.0
3,723,456	-		DZA65_RS17265	0.35	-0.2
3,723,456	-		DZA65_RS17265	0.35	-1.3
3,723,456	-		DZA65_RS17265	0.35	+0.7
3,723,456	-		DZA65_RS17265	0.35	-0.0
3,723,456	-		DZA65_RS17265	0.35	-1.8
3,723,456	-		DZA65_RS17265	0.35	-0.8
3,723,456	-		DZA65_RS17265	0.35	+1.5
3,723,456	-		DZA65_RS17265	0.35	-3.3
3,723,456	-		DZA65_RS17265	0.35	+2.6
3,723,456	-		DZA65_RS17265	0.35	-1.3
3,723,456	-		DZA65_RS17265	0.35	+0.8
3,723,460	+		DZA65_RS17265	0.35	+1.1
3,723,460	+		DZA65_RS17265	0.35	-1.2
3,723,460	+		DZA65_RS17265	0.35	+0.3
3,723,460	+		DZA65_RS17265	0.35	+0.9
3,723,461	-		DZA65_RS17265	0.35	-2.2
3,723,475	+		DZA65_RS17265	0.37	-0.1
3,723,475	+		DZA65_RS17265	0.37	-0.5
3,723,475	+		DZA65_RS17265	0.37	+1.6
3,723,476	-				-1.6
3,723,476	-		DZA65_RS17265	0.37	-1.6
3,723,479	+		DZA65_RS17265	0.38	-1.3
3,723,480	-		DZA65_RS17265	0.38	+0.2
3,723,524	+		DZA65_RS17265	0.44	-1.0
3,723,524	+		DZA65_RS17265	0.44	-1.6
3,723,525	-		DZA65_RS17265	0.44	+1.0
3,723,536	+		DZA65_RS17265	0.45	-1.8
3,723,537	-		DZA65_RS17265	0.45	+1.3
3,723,548	+		DZA65_RS17265	0.47	+1.0
3,723,548	+		DZA65_RS17265	0.47	+2.1
3,723,548	+		DZA65_RS17265	0.47	+0.3
3,723,548	+		DZA65_RS17265	0.47	+0.3
3,723,548	+		DZA65_RS17265	0.47	+3.3
3,723,548	+		DZA65_RS17265	0.47	+0.4
3,723,548	+		DZA65_RS17265	0.47	-1.8
3,723,549	-		DZA65_RS17265	0.47	-1.6
3,723,549	-		DZA65_RS17265	0.47	+0.7
3,723,549	-		DZA65_RS17265	0.47	+1.5
3,723,549	-		DZA65_RS17265	0.47	-2.3
3,723,549	-		DZA65_RS17265	0.47	-0.0
3,723,558	+		DZA65_RS17265	0.48	+1.8
3,723,558	+		DZA65_RS17265	0.48	+0.7
3,723,558	+		DZA65_RS17265	0.48	-2.5
3,723,558	+		DZA65_RS17265	0.48	-0.6
3,723,558	+		DZA65_RS17265	0.48	+1.2
3,723,559	-		DZA65_RS17265	0.48	+0.1
3,723,580	+		DZA65_RS17265	0.51	+0.6
3,723,580	+		DZA65_RS17265	0.51	+1.0
3,723,581	-				-2.0
3,723,614	+		DZA65_RS17265	0.55	+2.0
3,723,614	+		DZA65_RS17265	0.55	+1.9
3,723,614	+		DZA65_RS17265	0.55	-1.3
3,723,658	+		DZA65_RS17265	0.61	+0.6
3,723,659	-		DZA65_RS17265	0.61	-2.9
3,723,676	+		DZA65_RS17265	0.64	+1.0
3,723,676	+		DZA65_RS17265	0.64	-0.8
3,723,676	+		DZA65_RS17265	0.64	-0.0
3,723,676	+		DZA65_RS17265	0.64	-0.1
3,723,676	+		DZA65_RS17265	0.64	-1.0
3,723,676	+		DZA65_RS17265	0.64	-1.6
3,723,676	+		DZA65_RS17265	0.64	+0.2
3,723,676	+		DZA65_RS17265	0.64	-1.3
3,723,676	+		DZA65_RS17265	0.64	+0.2
3,723,676	+		DZA65_RS17265	0.64	+1.4
3,723,676	+		DZA65_RS17265	0.64	+0.4
3,723,676	+		DZA65_RS17265	0.64	+0.8
3,723,677	-		DZA65_RS17265	0.64	+0.4
3,723,677	-		DZA65_RS17265	0.64	-0.4
3,723,677	-		DZA65_RS17265	0.64	+1.2
3,723,677	-		DZA65_RS17265	0.64	-0.6
3,723,677	-		DZA65_RS17265	0.64	+1.0
3,723,677	-		DZA65_RS17265	0.64	-2.5
3,723,677	-		DZA65_RS17265	0.64	-1.3
3,723,677	-		DZA65_RS17265	0.64	-1.3
3,723,677	-		DZA65_RS17265	0.64	+1.3
3,723,694	-		DZA65_RS17265	0.66	+1.9
3,723,694	-		DZA65_RS17265	0.66	+0.5
3,723,701	-		DZA65_RS17265	0.67	-0.4
3,723,809	+		DZA65_RS17265	0.81	-0.8
3,723,810	-		DZA65_RS17265	0.81	-0.1
3,723,810	-		DZA65_RS17265	0.81	-0.0
3,723,810	-		DZA65_RS17265	0.81	+0.6
3,723,810	-		DZA65_RS17265	0.81	+1.3
3,723,884	+				-0.0
3,723,925	+				-0.3
3,723,964	-				-0.6
3,723,983	+				-0.0
3,724,000	+				-0.0
3,724,000	+				+2.0
3,724,000	+				-2.6
3,724,000	+				+0.9
3,724,001	-				+0.5
3,724,018	+				-1.3
3,724,018	+				-1.6
3,724,018	+				-0.8
3,724,018	+				-1.6
3,724,018	+				-1.2
3,724,018	+				-0.6
3,724,018	+				-1.3
3,724,018	+				-1.5
3,724,019	-				+0.4
3,724,019	-				-2.0
3,724,019	-				-0.4
3,724,019	-				-2.0
3,724,019	-				-2.2
3,724,019	-				-1.0
3,724,019	-				-0.6
3,724,019	-				-1.6
3,724,019	-				-0.8
3,724,019	-				-0.6
3,724,019	-				-0.2
3,724,019	-				-1.7
3,724,019	-				+1.6
3,724,020	+				+0.0
3,724,020	+				+1.0
3,724,020	+				-0.0
3,724,020	+				+1.3
3,724,020	+				+1.9
3,724,021	-				-1.0
3,724,021	-				-0.7
3,724,021	-				-0.3
3,724,041	+				-2.7
3,724,150	+				-0.6
3,724,151	-				+0.1
3,724,289	-		DZA65_RS17270	0.19	-1.0
3,724,289	-		DZA65_RS17270	0.19	-1.4
3,724,289	-		DZA65_RS17270	0.19	-0.2
3,724,306	+		DZA65_RS17270	0.20	-1.0
3,724,306	+		DZA65_RS17270	0.20	-1.8
3,724,306	+		DZA65_RS17270	0.20	-0.3
3,724,306	+		DZA65_RS17270	0.20	+1.3
3,724,306	+		DZA65_RS17270	0.20	+1.4
3,724,307	-		DZA65_RS17270	0.20	-2.0
3,724,307	-		DZA65_RS17270	0.20	-0.0
3,724,319	+		DZA65_RS17270	0.21	-3.2
3,724,319	+		DZA65_RS17270	0.21	-2.7
3,724,319	+		DZA65_RS17270	0.21	-0.4
3,724,319	+		DZA65_RS17270	0.21	+0.2
3,724,319	+		DZA65_RS17270	0.21	+2.5
3,724,319	+		DZA65_RS17270	0.21	-3.3
3,724,320	-		DZA65_RS17270	0.21	+0.1
3,724,320	-		DZA65_RS17270	0.21	+0.1
3,724,320	-		DZA65_RS17270	0.21	-1.6
3,724,320	-		DZA65_RS17270	0.21	-1.6
3,724,320	-		DZA65_RS17270	0.21	-1.8
3,724,320	-		DZA65_RS17270	0.21	-1.0
3,724,339	+		DZA65_RS17270	0.23	-1.0
3,724,339	+		DZA65_RS17270	0.23	-0.4
3,724,339	+		DZA65_RS17270	0.23	-0.0
3,724,340	-		DZA65_RS17270	0.23	-1.1
3,724,340	-		DZA65_RS17270	0.23	+0.7
3,724,340	-				-1.3
3,724,340	-		DZA65_RS17270	0.23	-1.6
3,724,340	-		DZA65_RS17270	0.23	-1.8
3,724,340	-		DZA65_RS17270	0.23	-0.5
3,724,345	+		DZA65_RS17270	0.23	-0.2
3,724,345	+		DZA65_RS17270	0.23	-1.5
3,724,345	+		DZA65_RS17270	0.23	-1.3
3,724,345	+		DZA65_RS17270	0.23	-0.5
3,724,345	+		DZA65_RS17270	0.23	+0.9
3,724,345	+		DZA65_RS17270	0.23	+0.5
3,724,345	+		DZA65_RS17270	0.23	-0.6
3,724,346	-		DZA65_RS17270	0.23	-1.5
3,724,346	-				-1.3
3,724,374	+		DZA65_RS17270	0.25	+0.2
3,724,374	+		DZA65_RS17270	0.25	-0.9
3,724,374	+		DZA65_RS17270	0.25	+0.3
3,724,374	+		DZA65_RS17270	0.25	-0.7
3,724,374	+		DZA65_RS17270	0.25	-0.6
3,724,374	+		DZA65_RS17270	0.25	+0.0
3,724,374	+		DZA65_RS17270	0.25	-0.8
3,724,374	+		DZA65_RS17270	0.25	+0.6
3,724,375	-		DZA65_RS17270	0.25	-0.3
3,724,375	-		DZA65_RS17270	0.25	-0.0
3,724,375	-		DZA65_RS17270	0.25	-1.3
3,724,375	-		DZA65_RS17270	0.25	+1.6
3,724,375	-		DZA65_RS17270	0.25	-1.6
3,724,375	-		DZA65_RS17270	0.25	-2.4
3,724,375	-		DZA65_RS17270	0.25	-0.3
3,724,394	+		DZA65_RS17270	0.27	-0.3
3,724,395	-		DZA65_RS17270	0.27	-1.6
3,724,492	+		DZA65_RS17270	0.33	+3.3
3,724,492	+		DZA65_RS17270	0.33	-2.1
3,724,493	-		DZA65_RS17270	0.34	+0.8
3,724,506	+		DZA65_RS17270	0.34	-0.6
3,724,507	-		DZA65_RS17270	0.35	-0.8
3,724,516	+		DZA65_RS17270	0.35	+0.7
3,724,516	+		DZA65_RS17270	0.35	-1.0
3,724,517	-		DZA65_RS17270	0.35	+1.0
3,724,563	+		DZA65_RS17270	0.39	+0.5
3,724,563	+		DZA65_RS17270	0.39	-0.6
3,724,564	-		DZA65_RS17270	0.39	-0.0
3,724,613	+		DZA65_RS17270	0.42	-2.9
3,724,614	-		DZA65_RS17270	0.42	+1.2
3,724,614	-		DZA65_RS17270	0.42	-0.0
3,724,621	+		DZA65_RS17270	0.43	-1.6
3,724,621	+		DZA65_RS17270	0.43	-1.7
3,724,621	+		DZA65_RS17270	0.43	-0.6
3,724,621	+		DZA65_RS17270	0.43	-2.3
3,724,621	+		DZA65_RS17270	0.43	+2.1
3,724,622	-		DZA65_RS17270	0.43	-1.2
3,724,622	-		DZA65_RS17270	0.43	-0.2
3,724,622	-		DZA65_RS17270	0.43	-0.6
3,724,665	+		DZA65_RS17270	0.46	-1.4
3,724,671	+		DZA65_RS17270	0.46	-1.3
3,724,671	+		DZA65_RS17270	0.46	+1.1
3,724,686	+		DZA65_RS17270	0.47	+1.2
3,724,686	+		DZA65_RS17270	0.47	-1.3
3,724,686	+		DZA65_RS17270	0.47	-2.0
3,724,687	-		DZA65_RS17270	0.47	-0.6
3,724,687	-		DZA65_RS17270	0.47	-0.3
3,724,690	+		DZA65_RS17270	0.48	-1.3
3,724,690	+		DZA65_RS17270	0.48	-0.2
3,724,690	+		DZA65_RS17270	0.48	+0.6
3,724,691	-		DZA65_RS17270	0.48	-2.8
3,724,712	-		DZA65_RS17270	0.49	+0.9
3,724,726	+		DZA65_RS17270	0.50	-1.0
3,724,726	+		DZA65_RS17270	0.50	-0.6
3,724,726	+		DZA65_RS17270	0.50	+1.2
3,724,726	+		DZA65_RS17270	0.50	-1.3
3,724,726	+		DZA65_RS17270	0.50	-1.6
3,724,726	+		DZA65_RS17270	0.50	-0.8
3,724,727	-		DZA65_RS17270	0.50	-1.5
3,724,727	-		DZA65_RS17270	0.50	-1.6
3,724,727	-		DZA65_RS17270	0.50	-2.2
3,724,727	-		DZA65_RS17270	0.50	+0.1
3,724,727	-		DZA65_RS17270	0.50	-0.7
3,724,727	-		DZA65_RS17270	0.50	-0.2
3,724,727	-		DZA65_RS17270	0.50	+2.2
3,724,727	-		DZA65_RS17270	0.50	-1.2
3,724,727	-		DZA65_RS17270	0.50	-0.4
3,724,727	-		DZA65_RS17270	0.50	+1.4
3,724,756	-		DZA65_RS17270	0.52	-0.8
3,724,777	+		DZA65_RS17270	0.54	-1.2
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