Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17230

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,716,378	+		DZA65_RS17220	0.35	-1.2
3,716,379	-		DZA65_RS17220	0.35	-1.5
3,716,438	+		DZA65_RS17220	0.43	+0.9
3,716,438	+		DZA65_RS17220	0.43	-1.0
3,716,438	+		DZA65_RS17220	0.43	+0.7
3,716,438	+		DZA65_RS17220	0.43	-0.0
3,716,439	-		DZA65_RS17220	0.43	-0.4
3,716,439	-		DZA65_RS17220	0.43	+0.2
3,716,439	-		DZA65_RS17220	0.43	-0.4
3,716,439	-		DZA65_RS17220	0.43	-2.2
3,716,439	-		DZA65_RS17220	0.43	-2.6
3,716,486	+		DZA65_RS17220	0.49	-0.8
3,716,486	+		DZA65_RS17220	0.49	-2.9
3,716,514	-		DZA65_RS17220	0.52	+1.0
3,716,514	-		DZA65_RS17220	0.52	-2.3
3,716,550	+		DZA65_RS17220	0.57	-0.9
3,716,698	-		DZA65_RS17220	0.75	+2.1
3,716,713	+		DZA65_RS17220	0.77	+1.3
3,716,714	-		DZA65_RS17220	0.77	+1.6
3,716,714	-		DZA65_RS17220	0.77	+0.5
3,716,778	+		DZA65_RS17220	0.85	-1.0
3,716,778	+		DZA65_RS17220	0.85	-1.0
3,716,779	-		DZA65_RS17220	0.85	-0.8
3,716,779	-		DZA65_RS17220	0.85	+2.0
3,716,779	-		DZA65_RS17220	0.85	+2.4
3,716,779	-		DZA65_RS17220	0.85	+0.5
3,716,828	+				-0.8
3,716,828	+				-1.4
3,716,828	+				-0.5
3,716,828	+				-1.3
3,716,829	-				-1.2
3,716,829	-				-0.6
3,716,829	-				-3.7
3,716,829	-				-1.6
3,716,829	-				+0.5
3,716,829	-				+0.4
3,716,829	-				+1.1
3,716,832	-				-1.8
3,716,865	+				-2.8
3,716,865	+				+0.2
3,716,866	-				-0.0
3,716,866	-				+1.2
3,716,866	-				-0.6
3,716,869	-				-1.0
3,716,869	-				+0.0
3,716,932	-				+1.6
3,716,932	-				+1.4
3,716,975	+				+1.0
3,716,975	+				+1.5
3,717,018	-				+0.2
3,717,037	+				+0.3
3,717,037	+				+0.1
3,717,038	-				+0.5
3,717,038	-				+2.1
3,717,038	-				+1.2
3,717,038	-				-1.1
3,717,038	-				+1.0
3,717,038	-				-0.9
3,717,041	+				-1.4
3,717,041	+				-0.9
3,717,179	+		DZA65_RS17225	0.29	-1.3
3,717,179	+		DZA65_RS17225	0.29	+2.6
3,717,179	+		DZA65_RS17225	0.29	-0.6
3,717,179	+		DZA65_RS17225	0.29	-3.6
3,717,179	+		DZA65_RS17225	0.29	+1.0
3,717,179	+		DZA65_RS17225	0.29	+3.3
3,717,179	+		DZA65_RS17225	0.29	-1.1
3,717,179	+		DZA65_RS17225	0.29	-1.4
3,717,180	-		DZA65_RS17225	0.30	+1.1
3,717,180	-		DZA65_RS17225	0.30	-2.4
3,717,180	-		DZA65_RS17225	0.30	+1.7
3,717,180	-		DZA65_RS17225	0.30	-0.3
3,717,180	-		DZA65_RS17225	0.30	+0.2
3,717,180	-		DZA65_RS17225	0.30	+0.8
3,717,180	-		DZA65_RS17225	0.30	-1.8
3,717,180	-		DZA65_RS17225	0.30	+1.0
3,717,180	-		DZA65_RS17225	0.30	+0.2
3,717,180	-		DZA65_RS17225	0.30	+0.6
3,717,180	-		DZA65_RS17225	0.30	+1.6
3,717,205	+		DZA65_RS17225	0.41	+1.0
3,717,237	+		DZA65_RS17225	0.54	-0.5
3,717,237	+		DZA65_RS17225	0.54	-0.9
3,717,237	+		DZA65_RS17225	0.54	-0.4
3,717,237	+		DZA65_RS17225	0.54	+2.2
3,717,238	-		DZA65_RS17225	0.55	+2.1
3,717,238	-		DZA65_RS17225	0.55	-0.4
3,717,238	-		DZA65_RS17225	0.55	-1.0
3,717,367	+				+1.9
3,717,367	+				+1.0
3,717,367	+				+1.3
3,717,367	+				-1.5
3,717,367	+				+0.4
3,717,367	+				+0.8
3,717,367	+				+0.7
3,717,368	-				+1.1
3,717,368	-				-2.5
3,717,368	-				-2.5
3,717,478	+		DZA65_RS17230	0.31	-0.4
3,717,478	+		DZA65_RS17230	0.31	+0.2
3,717,479	-		DZA65_RS17230	0.31	-2.0
3,717,499	+		DZA65_RS17230	0.36	+0.1
3,717,707	+		DZA65_RS17230	0.87	+2.0
3,717,707	+		DZA65_RS17230	0.87	-1.9
3,717,707	+		DZA65_RS17230	0.87	-0.5
3,717,707	+		DZA65_RS17230	0.87	-0.4
3,717,707	+				+0.4
3,717,707	+		DZA65_RS17230	0.87	-0.6
3,717,707	+		DZA65_RS17230	0.87	+2.3
3,717,707	+		DZA65_RS17230	0.87	-2.0
3,717,707	+		DZA65_RS17230	0.87	-0.4
3,717,707	+		DZA65_RS17230	0.87	-1.6
3,717,707	+		DZA65_RS17230	0.87	-1.4
3,717,707	+		DZA65_RS17230	0.87	+1.1
3,717,708	-		DZA65_RS17230	0.87	-2.9
3,717,708	-		DZA65_RS17230	0.87	-1.1
3,717,708	-		DZA65_RS17230	0.87	+0.6
3,717,708	-		DZA65_RS17230	0.87	-0.3
3,717,708	-		DZA65_RS17230	0.87	-0.9
3,717,708	-		DZA65_RS17230	0.87	-2.8
3,717,708	-		DZA65_RS17230	0.87	+1.2
3,717,708	-		DZA65_RS17230	0.87	+2.3
3,717,708	-		DZA65_RS17230	0.87	+2.0
3,717,716	+		DZA65_RS17230	0.89	-0.5
3,717,716	+		DZA65_RS17230	0.89	+1.1
3,717,716	+		DZA65_RS17230	0.89	-0.8
3,717,716	+		DZA65_RS17230	0.89	-0.5
3,717,717	-		DZA65_RS17230	0.89	-1.4
3,717,717	-		DZA65_RS17230	0.89	-0.8
3,717,717	-		DZA65_RS17230	0.89	+0.2
3,717,717	-		DZA65_RS17230	0.89	+2.0
3,717,717	-		DZA65_RS17230	0.89	+0.3
3,717,717	-		DZA65_RS17230	0.89	-0.6
3,717,787	-				-1.6
3,717,787	-				-0.9
3,717,816	+				-1.0
3,717,817	-				-1.4
3,717,817	-				+1.2
3,717,817	-				-2.2
3,717,817	-				+0.6
3,717,870	+				-0.0
3,717,871	-				+0.7
3,717,871	-				+0.2
3,717,871	-				-0.6
3,717,952	-				+2.3
3,717,952	-				-1.1
3,717,952	-				-0.0
3,717,952	-				+0.1
3,717,952	-				+1.2
3,717,952	-				+0.4
3,717,954	+		DZA65_RS17235	0.10	+0.8
3,717,954	+		DZA65_RS17235	0.10	+1.6
3,717,954	+		DZA65_RS17235	0.10	+1.0
3,717,954	+		DZA65_RS17235	0.10	+0.5
3,717,968	-		DZA65_RS17235	0.11	-0.6
3,717,968	-		DZA65_RS17235	0.11	-0.9
3,717,978	+		DZA65_RS17235	0.11	+0.1
3,717,978	+				+1.0
3,717,978	+		DZA65_RS17235	0.11	-2.2
3,717,979	-		DZA65_RS17235	0.11	+0.3
3,717,979	-		DZA65_RS17235	0.11	-1.3
3,718,066	-		DZA65_RS17235	0.15	-0.1
3,718,066	-		DZA65_RS17235	0.15	+0.2
3,718,066	-		DZA65_RS17235	0.15	-1.4
3,718,070	+		DZA65_RS17235	0.15	+0.7
3,718,070	+		DZA65_RS17235	0.15	-1.4
3,718,070	+		DZA65_RS17235	0.15	-3.2
3,718,070	+		DZA65_RS17235	0.15	+0.5
3,718,070	+		DZA65_RS17235	0.15	-2.6
3,718,070	+		DZA65_RS17235	0.15	+0.8
3,718,070	+		DZA65_RS17235	0.15	+1.5
3,718,070	+		DZA65_RS17235	0.15	-0.3
3,718,070	+		DZA65_RS17235	0.15	+1.3
3,718,070	+		DZA65_RS17235	0.15	-1.6
3,718,070	+		DZA65_RS17235	0.15	+0.3
3,718,070	+		DZA65_RS17235	0.15	-2.2
3,718,070	+		DZA65_RS17235	0.15	-1.4
3,718,070	+		DZA65_RS17235	0.15	+0.7
3,718,071	-		DZA65_RS17235	0.16	+1.6
3,718,071	-		DZA65_RS17235	0.16	+1.8
3,718,071	-		DZA65_RS17235	0.16	-1.8
3,718,071	-		DZA65_RS17235	0.16	+0.6
3,718,071	-		DZA65_RS17235	0.16	-0.4
3,718,071	-		DZA65_RS17235	0.16	-3.0
3,718,071	-		DZA65_RS17235	0.16	+0.4
3,718,071	-		DZA65_RS17235	0.16	+1.3
3,718,071	-		DZA65_RS17235	0.16	+0.4
3,718,071	-				-1.4
3,718,074	+		DZA65_RS17235	0.16	-0.4
3,718,074	+		DZA65_RS17235	0.16	+0.2
3,718,074	+		DZA65_RS17235	0.16	-1.0
3,718,074	+		DZA65_RS17235	0.16	-2.7
3,718,074	+		DZA65_RS17235	0.16	+2.7
3,718,074	+		DZA65_RS17235	0.16	-2.2
3,718,074	+		DZA65_RS17235	0.16	+1.9
3,718,074	+		DZA65_RS17235	0.16	-0.4
3,718,075	-		DZA65_RS17235	0.16	-1.2
3,718,075	-		DZA65_RS17235	0.16	-0.8
3,718,075	-		DZA65_RS17235	0.16	-0.0
3,718,075	-		DZA65_RS17235	0.16	-2.4
3,718,075	-		DZA65_RS17235	0.16	-1.0
3,718,104	+		DZA65_RS17235	0.17	+0.6
3,718,104	+				-1.6
3,718,105	-		DZA65_RS17235	0.17	+1.0
3,718,105	-		DZA65_RS17235	0.17	+1.0
3,718,116	+		DZA65_RS17235	0.18	-0.0
3,718,116	+		DZA65_RS17235	0.18	-1.8
3,718,116	+		DZA65_RS17235	0.18	+0.1
3,718,116	+		DZA65_RS17235	0.18	-1.4
3,718,299	-		DZA65_RS17235	0.26	-1.6
3,718,299	-		DZA65_RS17235	0.26	-0.4
3,718,367	+		DZA65_RS17235	0.29	+0.1
3,718,513	-		DZA65_RS17235	0.36	+0.4
3,718,513	-		DZA65_RS17235	0.36	-0.9
3,718,513	-		DZA65_RS17235	0.36	-0.8
3,718,622	+		DZA65_RS17235	0.41	+0.6
3,718,623	-		DZA65_RS17235	0.41	+0.3
3,718,625	+		DZA65_RS17235	0.41	-2.8
3,718,625	+		DZA65_RS17235	0.41	-2.6
3,718,625	+		DZA65_RS17235	0.41	-1.8
3,718,625	+		DZA65_RS17235	0.41	-2.1
3,718,625	+		DZA65_RS17235	0.41	+0.8
3,718,625	+		DZA65_RS17235	0.41	+2.0
3,718,625	+		DZA65_RS17235	0.41	+2.3
3,718,625	+		DZA65_RS17235	0.41	-1.0
3,718,625	+		DZA65_RS17235	0.41	-0.6
3,718,626	-		DZA65_RS17235	0.41	-1.7
3,718,626	-		DZA65_RS17235	0.41	-0.0
3,718,626	-		DZA65_RS17235	0.41	+0.2
3,718,626	-		DZA65_RS17235	0.41	+1.3
3,718,626	-		DZA65_RS17235	0.41	+1.1
3,718,655	+		DZA65_RS17235	0.43	+0.9
3,718,656	-		DZA65_RS17235	0.43	+0.2
3,718,656	-		DZA65_RS17235	0.43	+1.7
3,718,656	-		DZA65_RS17235	0.43	-1.0
3,718,656	-		DZA65_RS17235	0.43	+0.1
3,718,656	-		DZA65_RS17235	0.43	+1.0
3,718,663	+		DZA65_RS17235	0.43	+1.8
3,718,663	+		DZA65_RS17235	0.43	+1.8
3,718,664	-		DZA65_RS17235	0.43	+0.4
3,718,674	+		DZA65_RS17235	0.44	-0.6
3,718,675	-		DZA65_RS17235	0.44	+1.2
3,718,675	-		DZA65_RS17235	0.44	-1.0
3,718,692	+		DZA65_RS17235	0.44	+0.2
3,718,692	+		DZA65_RS17235	0.44	+0.4
3,718,693	-		DZA65_RS17235	0.44	-0.8
3,718,693	-		DZA65_RS17235	0.44	-2.7
3,718,693	-		DZA65_RS17235	0.44	+2.4
3,718,732	-		DZA65_RS17235	0.46	-2.5
3,718,732	-		DZA65_RS17235	0.46	+0.4
3,718,732	-		DZA65_RS17235	0.46	+0.8