Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15780

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,426,614	+		DZA65_RS15775	0.45	-1.0
3,426,614	+		DZA65_RS15775	0.45	-2.1
3,426,614	+		DZA65_RS15775	0.45	-1.9
3,426,615	-		DZA65_RS15775	0.45	-0.5
3,426,632	+		DZA65_RS15775	0.46	+0.5
3,426,683	+		DZA65_RS15775	0.50	+0.3
3,426,683	+		DZA65_RS15775	0.50	+0.3
3,426,684	-		DZA65_RS15775	0.50	-0.6
3,426,684	-				-1.4
3,426,718	-		DZA65_RS15775	0.53	+0.2
3,426,758	+		DZA65_RS15775	0.56	+0.3
3,426,758	+		DZA65_RS15775	0.56	+1.3
3,426,759	-		DZA65_RS15775	0.56	+1.4
3,426,759	-		DZA65_RS15775	0.56	+0.1
3,426,759	-		DZA65_RS15775	0.56	+1.6
3,426,759	-		DZA65_RS15775	0.56	-0.6
3,426,759	-		DZA65_RS15775	0.56	-0.7
3,426,759	-		DZA65_RS15775	0.56	-0.0
3,426,759	-		DZA65_RS15775	0.56	-1.3
3,426,767	+		DZA65_RS15775	0.57	+0.9
3,426,838	+		DZA65_RS15775	0.62	+2.0
3,426,838	+		DZA65_RS15775	0.62	-0.7
3,426,838	+		DZA65_RS15775	0.62	+0.9
3,426,838	+		DZA65_RS15775	0.62	-1.1
3,426,838	+		DZA65_RS15775	0.62	+2.2
3,426,838	+		DZA65_RS15775	0.62	+0.3
3,426,838	+		DZA65_RS15775	0.62	+1.5
3,426,839	-		DZA65_RS15775	0.62	+1.8
3,426,839	-		DZA65_RS15775	0.62	-1.7
3,426,839	-		DZA65_RS15775	0.62	+0.7
3,426,839	-		DZA65_RS15775	0.62	-1.9
3,426,839	-		DZA65_RS15775	0.62	+1.5
3,426,839	-		DZA65_RS15775	0.62	+0.4
3,426,839	-		DZA65_RS15775	0.62	-1.9
3,426,839	-		DZA65_RS15775	0.62	+0.9
3,426,839	-		DZA65_RS15775	0.62	+2.7
3,426,839	-		DZA65_RS15775	0.62	+0.9
3,426,839	-		DZA65_RS15775	0.62	-0.7
3,426,846	-		DZA65_RS15775	0.63	+1.6
3,426,915	-		DZA65_RS15775	0.68	-1.4
3,426,915	-		DZA65_RS15775	0.68	+1.1
3,427,036	+		DZA65_RS15775	0.77	+0.9
3,427,044	+		DZA65_RS15775	0.78	+1.6
3,427,075	-		DZA65_RS15775	0.80	-0.1
3,427,130	+		DZA65_RS15775	0.84	+1.7
3,427,131	-		DZA65_RS15775	0.84	-0.1
3,427,152	-		DZA65_RS15775	0.86	+0.6
3,427,180	+		DZA65_RS15775	0.88	+1.1
3,427,180	+		DZA65_RS15775	0.88	+1.0
3,427,180	+		DZA65_RS15775	0.88	+0.6
3,427,181	-		DZA65_RS15775	0.88	-0.1
3,427,231	+				+0.1
3,427,231	+				-1.1
3,427,232	-				-2.1
3,427,232	-				+1.2
3,427,232	-				+1.3
3,427,232	-				+0.0
3,427,328	+				+2.9
3,427,328	+				+1.2
3,427,329	-				-0.4
3,427,385	+				-0.1
3,427,386	-				-0.3
3,427,407	+				+1.6
3,427,407	+				+1.6
3,427,410	+				-0.1
3,427,410	+				-2.1
3,427,411	-				+1.9
3,427,589	-		DZA65_RS15780	0.14	-3.8
3,427,667	-		DZA65_RS15780	0.21	+3.5
3,427,667	-		DZA65_RS15780	0.21	+0.9
3,427,689	+		DZA65_RS15780	0.22	+0.9
3,427,690	-		DZA65_RS15780	0.22	-0.5
3,427,761	+		DZA65_RS15780	0.28	+1.1
3,427,761	+		DZA65_RS15780	0.28	-0.9
3,427,762	-		DZA65_RS15780	0.28	-0.0
3,427,762	-		DZA65_RS15780	0.28	+2.2
3,427,762	-		DZA65_RS15780	0.28	-1.6
3,427,762	-		DZA65_RS15780	0.28	+0.9
3,427,830	+		DZA65_RS15780	0.34	+0.3
3,427,964	-		DZA65_RS15780	0.44	-0.4
3,428,080	+		DZA65_RS15780	0.54	+0.1
3,428,089	+		DZA65_RS15780	0.54	+1.5
3,428,089	+		DZA65_RS15780	0.54	+0.6
3,428,089	+		DZA65_RS15780	0.54	+2.3
3,428,089	+		DZA65_RS15780	0.54	-0.3
3,428,089	+		DZA65_RS15780	0.54	-2.3
3,428,089	+		DZA65_RS15780	0.54	-0.4
3,428,089	+		DZA65_RS15780	0.54	+0.2
3,428,089	+		DZA65_RS15780	0.54	+2.0
3,428,089	+				-1.1
3,428,089	+		DZA65_RS15780	0.54	-1.1
3,428,089	+		DZA65_RS15780	0.54	+0.6
3,428,090	-		DZA65_RS15780	0.54	-0.9
3,428,090	-		DZA65_RS15780	0.54	-1.9
3,428,090	-		DZA65_RS15780	0.54	-0.5
3,428,090	-		DZA65_RS15780	0.54	-0.9
3,428,090	-		DZA65_RS15780	0.54	+0.7
3,428,090	-		DZA65_RS15780	0.54	-0.9
3,428,090	-		DZA65_RS15780	0.54	+0.3
3,428,090	-		DZA65_RS15780	0.54	+1.6
3,428,090	-		DZA65_RS15780	0.54	-1.7
3,428,090	-		DZA65_RS15780	0.54	-0.7
3,428,090	-		DZA65_RS15780	0.54	+0.9
3,428,090	-		DZA65_RS15780	0.54	-0.8
3,428,091	+		DZA65_RS15780	0.54	-0.7
3,428,091	+		DZA65_RS15780	0.54	+0.1
3,428,091	+		DZA65_RS15780	0.54	-0.5
3,428,092	-		DZA65_RS15780	0.54	+0.2
3,428,124	+		DZA65_RS15780	0.57	-1.1
3,428,124	+		DZA65_RS15780	0.57	+2.8
3,428,124	+				-2.3
3,428,124	+		DZA65_RS15780	0.57	+2.6
3,428,124	+		DZA65_RS15780	0.57	+0.3
3,428,124	+		DZA65_RS15780	0.57	+0.0
3,428,125	-		DZA65_RS15780	0.57	-0.2
3,428,125	-		DZA65_RS15780	0.57	-0.5
3,428,125	-		DZA65_RS15780	0.57	+0.6
3,428,125	-		DZA65_RS15780	0.57	+0.9
3,428,125	-		DZA65_RS15780	0.57	-1.1
3,428,128	-		DZA65_RS15780	0.57	+0.2
3,428,150	+		DZA65_RS15780	0.59	-0.4
3,428,193	+		DZA65_RS15780	0.63	-2.1
3,428,193	+		DZA65_RS15780	0.63	-1.7
3,428,194	-		DZA65_RS15780	0.63	+0.9
3,428,205	-		DZA65_RS15780	0.63	+1.4
3,428,205	-		DZA65_RS15780	0.63	-0.7
3,428,241	+		DZA65_RS15780	0.66	-0.5
3,428,242	-		DZA65_RS15780	0.66	+0.0
3,428,280	+		DZA65_RS15780	0.69	+1.8
3,428,280	+		DZA65_RS15780	0.69	+0.2
3,428,290	+		DZA65_RS15780	0.70	+0.8
3,428,473	-		DZA65_RS15780	0.85	+2.1
3,428,505	+		DZA65_RS15780	0.87	-1.5
3,428,505	+		DZA65_RS15780	0.87	-0.5
3,428,506	-		DZA65_RS15780	0.87	-0.1
3,428,589	+				+0.9
3,428,589	+				-0.1
3,428,589	+				-1.7
3,428,589	+				-0.5
3,428,589	+				+1.0
3,428,589	+				-0.7
3,428,589	+				+0.6
3,428,589	+				-0.7
3,428,589	+				-0.7
3,428,591	+				+1.2
3,428,592	-				-2.5
3,428,734	-				-0.8
3,428,786	+				-1.1
3,428,828	+				-0.9
3,428,891	+				+0.7
3,428,983	+				-0.2
3,428,989	+				-1.1
3,429,020	+				+1.1
3,429,020	+				+1.5
3,429,020	+				-0.7
3,429,020	+				-1.7
3,429,020	+				-2.3
3,429,021	-				-1.5
3,429,021	-				-1.5
3,429,072	+				+1.6
3,429,072	+				-1.7
3,429,073	-				+0.4
3,429,073	-				-2.7
3,429,175	-		DZA65_RS15785	0.15	-0.9
3,429,175	-		DZA65_RS15785	0.15	+0.5
3,429,259	+		DZA65_RS15785	0.22	+0.9
3,429,259	+		DZA65_RS15785	0.22	+0.3
3,429,268	+		DZA65_RS15785	0.23	+1.3
3,429,269	-		DZA65_RS15785	0.23	+1.3
3,429,276	+		DZA65_RS15785	0.24	+0.5
3,429,277	-				-1.7
3,429,301	+		DZA65_RS15785	0.26	+0.9
3,429,309	+		DZA65_RS15785	0.27	+0.2
3,429,309	+		DZA65_RS15785	0.27	-0.1
3,429,309	+		DZA65_RS15785	0.27	+0.2
3,429,310	-		DZA65_RS15785	0.27	-1.2
3,429,456	-		DZA65_RS15785	0.40	-1.7
3,429,470	+		DZA65_RS15785	0.41	-0.3
3,429,470	+		DZA65_RS15785	0.41	-1.5
3,429,470	+		DZA65_RS15785	0.41	-3.1
3,429,470	+		DZA65_RS15785	0.41	-1.1
3,429,471	-		DZA65_RS15785	0.42	-1.1
3,429,471	-				+0.5
3,429,471	-		DZA65_RS15785	0.42	-0.1
3,429,471	-		DZA65_RS15785	0.42	-2.0
3,429,471	-		DZA65_RS15785	0.42	+0.2
3,429,567	+		DZA65_RS15785	0.50	-1.3
3,429,574	+		DZA65_RS15785	0.51	+1.9
3,429,574	+		DZA65_RS15785	0.51	-0.3
3,429,574	+		DZA65_RS15785	0.51	-1.5
3,429,574	+		DZA65_RS15785	0.51	+0.7
3,429,574	+		DZA65_RS15785	0.51	+0.2
3,429,574	+		DZA65_RS15785	0.51	+0.3
3,429,574	+		DZA65_RS15785	0.51	-1.5
3,429,575	-		DZA65_RS15785	0.51	-1.5
3,429,575	-		DZA65_RS15785	0.51	-0.7
3,429,575	-		DZA65_RS15785	0.51	+2.3
3,429,575	-		DZA65_RS15785	0.51	-2.3
3,429,575	-		DZA65_RS15785	0.51	-0.9
3,429,575	-		DZA65_RS15785	0.51	+0.9
3,429,575	-		DZA65_RS15785	0.51	+0.9
3,429,575	-		DZA65_RS15785	0.51	-0.0
3,429,575	-		DZA65_RS15785	0.51	-0.4
3,429,575	-		DZA65_RS15785	0.51	-0.2
3,429,575	-		DZA65_RS15785	0.51	-0.1
3,429,575	-		DZA65_RS15785	0.51	+1.9
3,429,575	-		DZA65_RS15785	0.51	-0.7
3,429,575	-		DZA65_RS15785	0.51	-0.8
3,429,629	+		DZA65_RS15785	0.56	+4.1
3,429,629	+		DZA65_RS15785	0.56	-2.7