Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08710

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,843,801	+		DZA65_RS08700	0.90	+0.0
1,843,801	+		DZA65_RS08700	0.90	+0.1
1,843,801	+		DZA65_RS08700	0.90	-1.8
1,843,801	+		DZA65_RS08700	0.90	+0.3
1,843,801	+		DZA65_RS08700	0.90	-0.3
1,843,801	+		DZA65_RS08700	0.90	-1.2
1,843,801	+		DZA65_RS08700	0.90	+0.5
1,843,801	+		DZA65_RS08700	0.90	-1.2
1,843,802	-		DZA65_RS08700	0.90	-0.0
1,843,802	-		DZA65_RS08700	0.90	-0.3
1,843,802	-		DZA65_RS08700	0.90	-0.3
1,843,802	-		DZA65_RS08700	0.90	-2.3
1,843,802	-		DZA65_RS08700	0.90	-1.1
1,843,802	-		DZA65_RS08700	0.90	-1.5
1,843,802	-		DZA65_RS08700	0.90	-0.3
1,843,802	-		DZA65_RS08700	0.90	-0.9
1,843,802	-		DZA65_RS08700	0.90	-1.0
1,843,802	-		DZA65_RS08700	0.90	-0.9
1,843,802	-		DZA65_RS08700	0.90	+0.7
1,843,802	-		DZA65_RS08700	0.90	-0.9
1,843,802	-		DZA65_RS08700	0.90	-0.9
1,843,836	+				+1.2
1,843,998	+		DZA65_RS08705	0.11	+0.6
1,844,039	+		DZA65_RS08705	0.16	-0.1
1,844,039	+		DZA65_RS08705	0.16	+2.8
1,844,039	+		DZA65_RS08705	0.16	+1.0
1,844,040	-		DZA65_RS08705	0.16	+0.5
1,844,040	-		DZA65_RS08705	0.16	+0.9
1,844,040	-		DZA65_RS08705	0.16	+1.4
1,844,040	-		DZA65_RS08705	0.16	-1.0
1,844,040	-		DZA65_RS08705	0.16	-1.9
1,844,040	-		DZA65_RS08705	0.16	-1.5
1,844,040	-		DZA65_RS08705	0.16	-0.3
1,844,043	+		DZA65_RS08705	0.16	-0.3
1,844,043	+		DZA65_RS08705	0.16	-0.9
1,844,043	+		DZA65_RS08705	0.16	+1.6
1,844,043	+		DZA65_RS08705	0.16	-1.0
1,844,044	-		DZA65_RS08705	0.16	-0.8
1,844,044	-		DZA65_RS08705	0.16	-0.1
1,844,129	+		DZA65_RS08705	0.26	+0.2
1,844,129	+		DZA65_RS08705	0.26	+0.5
1,844,129	+		DZA65_RS08705	0.26	-1.9
1,844,129	+		DZA65_RS08705	0.26	+1.5
1,844,129	+		DZA65_RS08705	0.26	-0.9
1,844,129	+		DZA65_RS08705	0.26	-0.1
1,844,129	+		DZA65_RS08705	0.26	-0.4
1,844,130	-		DZA65_RS08705	0.26	+2.8
1,844,130	-		DZA65_RS08705	0.26	+0.8
1,844,130	-		DZA65_RS08705	0.26	-1.1
1,844,130	-		DZA65_RS08705	0.26	+1.1
1,844,130	-		DZA65_RS08705	0.26	+0.0
1,844,130	-		DZA65_RS08705	0.26	+0.4
1,844,130	-		DZA65_RS08705	0.26	+1.1
1,844,139	+		DZA65_RS08705	0.27	-1.3
1,844,139	+		DZA65_RS08705	0.27	-0.3
1,844,139	+		DZA65_RS08705	0.27	-1.1
1,844,140	-		DZA65_RS08705	0.27	-1.3
1,844,140	-		DZA65_RS08705	0.27	+0.4
1,844,140	-		DZA65_RS08705	0.27	+1.7
1,844,141	+		DZA65_RS08705	0.27	-0.3
1,844,141	+		DZA65_RS08705	0.27	-2.5
1,844,141	+		DZA65_RS08705	0.27	-2.5
1,844,182	+		DZA65_RS08705	0.32	+0.7
1,844,202	+		DZA65_RS08705	0.34	-1.1
1,844,230	+		DZA65_RS08705	0.38	-0.0
1,844,318	+		DZA65_RS08705	0.48	+0.6
1,844,318	+		DZA65_RS08705	0.48	-1.3
1,844,319	-		DZA65_RS08705	0.48	-1.9
1,844,404	-		DZA65_RS08705	0.57	-1.3
1,844,404	-		DZA65_RS08705	0.57	+1.8
1,844,413	-		DZA65_RS08705	0.58	+0.1
1,844,442	+		DZA65_RS08705	0.62	-0.9
1,844,442	+		DZA65_RS08705	0.62	+0.1
1,844,442	+		DZA65_RS08705	0.62	+0.8
1,844,443	-		DZA65_RS08705	0.62	-1.3
1,844,443	-		DZA65_RS08705	0.62	-0.3
1,844,443	-		DZA65_RS08705	0.62	-2.1
1,844,443	-		DZA65_RS08705	0.62	+0.7
1,844,461	+		DZA65_RS08705	0.64	+0.7
1,844,462	-		DZA65_RS08705	0.64	-1.3
1,844,462	-		DZA65_RS08705	0.64	+0.8
1,844,518	+		DZA65_RS08705	0.70	-0.1
1,844,518	+		DZA65_RS08705	0.70	-3.1
1,844,518	+		DZA65_RS08705	0.70	+0.8
1,844,519	-		DZA65_RS08705	0.70	-1.8
1,844,519	-		DZA65_RS08705	0.70	+0.5
1,844,519	-		DZA65_RS08705	0.70	-0.5
1,844,519	-		DZA65_RS08705	0.70	+0.7
1,844,519	-		DZA65_RS08705	0.70	+1.3
1,844,521	+		DZA65_RS08705	0.71	-1.4
1,844,522	-		DZA65_RS08705	0.71	-1.1
1,844,522	-		DZA65_RS08705	0.71	-2.9
1,844,522	-		DZA65_RS08705	0.71	+0.3
1,844,588	+		DZA65_RS08705	0.78	-0.6
1,844,588	+		DZA65_RS08705	0.78	-0.7
1,844,588	+		DZA65_RS08705	0.78	+1.9
1,844,588	+		DZA65_RS08705	0.78	+1.7
1,844,588	+		DZA65_RS08705	0.78	+0.1
1,844,588	+		DZA65_RS08705	0.78	-2.3
1,844,588	+		DZA65_RS08705	0.78	+1.0
1,844,588	+		DZA65_RS08705	0.78	-1.6
1,844,589	-		DZA65_RS08705	0.78	-1.0
1,844,589	-		DZA65_RS08705	0.78	-0.3
1,844,589	-		DZA65_RS08705	0.78	-0.3
1,844,589	-		DZA65_RS08705	0.78	+0.7
1,844,589	-		DZA65_RS08705	0.78	-0.3
1,844,589	-		DZA65_RS08705	0.78	-0.2
1,844,724	+				+0.5
1,844,742	+				-1.2
1,844,742	+				-1.5
1,844,742	+				-1.6
1,844,743	-				-2.1
1,844,743	-				-0.3
1,844,760	+				+1.3
1,844,760	+				+0.3
1,844,760	+				+0.3
1,844,761	-				+0.8
1,844,765	+				+1.2
1,844,765	+				-0.6
1,844,765	+				-0.1
1,844,765	+				+0.5
1,844,765	+				+1.0
1,844,765	+				-1.3
1,844,765	+				-1.9
1,844,765	+				-0.2
1,844,765	+				-0.3
1,844,765	+				+1.1
1,844,766	-				-2.1
1,844,766	-				-1.3
1,844,766	-				-0.3
1,844,766	-				-0.6
1,844,766	-				+0.6
1,844,769	-				+1.2
1,844,778	+				+0.7
1,844,778	+				+0.3
1,844,865	-				-0.3
1,844,894	+		DZA65_RS08710	0.13	+0.7
1,844,894	+		DZA65_RS08710	0.13	-0.3
1,844,894	+		DZA65_RS08710	0.13	-0.8
1,844,894	+		DZA65_RS08710	0.13	-1.9
1,844,935	+		DZA65_RS08710	0.18	-0.3
1,844,936	-		DZA65_RS08710	0.18	-0.0
1,845,058	+		DZA65_RS08710	0.33	+1.7
1,845,058	+		DZA65_RS08710	0.33	+1.1
1,845,058	+		DZA65_RS08710	0.33	-0.1
1,845,058	+		DZA65_RS08710	0.33	-1.1
1,845,058	+		DZA65_RS08710	0.33	+0.7
1,845,058	+		DZA65_RS08710	0.33	+2.0
1,845,059	-		DZA65_RS08710	0.33	+0.9
1,845,059	-		DZA65_RS08710	0.33	-1.9
1,845,059	-		DZA65_RS08710	0.33	+1.5
1,845,059	-		DZA65_RS08710	0.33	+0.1
1,845,102	+				-1.9
1,845,102	+		DZA65_RS08710	0.39	-1.3
1,845,102	+		DZA65_RS08710	0.39	+1.1
1,845,103	-		DZA65_RS08710	0.39	+0.2
1,845,104	+		DZA65_RS08710	0.39	+1.1
1,845,104	+		DZA65_RS08710	0.39	-1.5
1,845,104	+		DZA65_RS08710	0.39	+0.4
1,845,104	+		DZA65_RS08710	0.39	+0.5
1,845,104	+		DZA65_RS08710	0.39	-1.9
1,845,105	-		DZA65_RS08710	0.39	+0.9
1,845,105	-		DZA65_RS08710	0.39	+1.0
1,845,105	-		DZA65_RS08710	0.39	+3.5
1,845,105	-		DZA65_RS08710	0.39	-0.5
1,845,235	-		DZA65_RS08710	0.55	+0.7
1,845,354	+		DZA65_RS08710	0.70	+0.2
1,845,354	+		DZA65_RS08710	0.70	+0.6
1,845,453	+		DZA65_RS08710	0.82	+1.6
1,845,453	+		DZA65_RS08710	0.82	-2.1
1,845,453	+		DZA65_RS08710	0.82	-1.9
1,845,453	+		DZA65_RS08710	0.82	-1.6
1,845,453	+		DZA65_RS08710	0.82	+0.7
1,845,453	+		DZA65_RS08710	0.82	-1.0
1,845,454	-		DZA65_RS08710	0.82	+2.2
1,845,454	-		DZA65_RS08710	0.82	+0.1
1,845,454	-		DZA65_RS08710	0.82	+0.7
1,845,532	-				-1.6
1,845,532	-				+1.4
1,845,532	-				+1.7
1,845,532	-				-0.9
1,845,533	+				+0.7
1,845,533	+				-2.3
1,845,534	-				+0.1
1,845,534	-				-0.6
1,845,534	-				-1.5
1,845,534	-				-2.6
1,845,534	-				-0.9
1,845,565	+				+0.2
1,845,565	+				-1.8
1,845,566	-				-1.3
1,845,566	-				+1.2
1,845,566	-				-0.6
1,845,597	+				+0.9
1,845,597	+				+2.1
1,845,598	-				-1.1
1,845,598	-				+0.7
1,845,598	-				-0.9
1,845,598	-				-2.9
1,845,637	-				+2.3
1,845,686	-		DZA65_RS08715	0.11	-2.0
1,845,686	-		DZA65_RS08715	0.11	+0.4
1,845,759	-		DZA65_RS08715	0.20	-0.9
1,845,808	+		DZA65_RS08715	0.27	+0.5
1,845,808	+		DZA65_RS08715	0.27	+1.7
1,845,808	+		DZA65_RS08715	0.27	+1.1
1,845,809	-		DZA65_RS08715	0.27	+0.9
1,845,809	-		DZA65_RS08715	0.27	-2.6
1,845,809	-		DZA65_RS08715	0.27	+1.1
1,845,809	-		DZA65_RS08715	0.27	+0.7
1,845,811	+		DZA65_RS08715	0.27	+1.8
1,845,811	+		DZA65_RS08715	0.27	-1.9
1,845,811	+		DZA65_RS08715	0.27	-2.5
1,845,811	+		DZA65_RS08715	0.27	-2.1
1,845,811	+		DZA65_RS08715	0.27	-0.6
1,845,811	+		DZA65_RS08715	0.27	+0.6
1,845,811	+		DZA65_RS08715	0.27	+2.4
1,845,811	+		DZA65_RS08715	0.27	-1.9
1,845,811	+		DZA65_RS08715	0.27	+1.7
1,845,811	+		DZA65_RS08715	0.27	-1.4
1,845,811	+		DZA65_RS08715	0.27	+0.1
1,845,812	-		DZA65_RS08715	0.27	-0.3
1,845,812	-		DZA65_RS08715	0.27	-3.0
1,845,812	-		DZA65_RS08715	0.27	-3.6
1,845,845	+		DZA65_RS08715	0.31	+2.1
1,845,845	+		DZA65_RS08715	0.31	+0.5
1,845,845	+		DZA65_RS08715	0.31	+1.3
1,845,845	+		DZA65_RS08715	0.31	-0.3
1,845,869	-		DZA65_RS08715	0.35	+1.3
1,845,879	+		DZA65_RS08715	0.36	-2.3
1,845,879	+		DZA65_RS08715	0.36	-0.5
1,845,879	+		DZA65_RS08715	0.36	-0.3
1,845,879	+		DZA65_RS08715	0.36	+0.7
1,845,880	-		DZA65_RS08715	0.36	+1.3
1,845,880	-		DZA65_RS08715	0.36	-2.1
1,845,880	-		DZA65_RS08715	0.36	-0.1
1,845,880	-		DZA65_RS08715	0.36	-2.3
1,845,880	-		DZA65_RS08715	0.36	+2.0
1,845,881	+		DZA65_RS08715	0.36	+1.7
1,845,881	+		DZA65_RS08715	0.36	+0.9
1,845,881	+		DZA65_RS08715	0.36	+1.7
1,845,882	-		DZA65_RS08715	0.36	+2.3
1,845,882	-		DZA65_RS08715	0.36	-1.6
1,845,882	-		DZA65_RS08715	0.36	+0.7
1,845,882	-		DZA65_RS08715	0.36	+0.1
1,845,882	-		DZA65_RS08715	0.36	+0.4
1,845,913	-		DZA65_RS08715	0.40	-1.3
1,845,989	-		DZA65_RS08715	0.50	+0.7
1,845,989	-		DZA65_RS08715	0.50	-1.8
1,846,019	-		DZA65_RS08715	0.54	-0.3
1,846,030	-		DZA65_RS08715	0.56	-0.1
1,846,106	+		DZA65_RS08715	0.66	+1.3
1,846,106	+		DZA65_RS08715	0.66	-1.3
1,846,107	-		DZA65_RS08715	0.66	-1.1
1,846,107	-		DZA65_RS08715	0.66	-1.2
1,846,121	+		DZA65_RS08715	0.68	-0.0
1,846,121	+		DZA65_RS08715	0.68	-4.1
1,846,121	+		DZA65_RS08715	0.68	+1.0
1,846,190	+		DZA65_RS08715	0.77	+0.4
1,846,190	+		DZA65_RS08715	0.77	-1.5
1,846,209	-		DZA65_RS08715	0.79	+1.9
1,846,209	-		DZA65_RS08715	0.79	-2.3
1,846,211	+		DZA65_RS08715	0.80	+0.8
1,846,211	+		DZA65_RS08715	0.80	+1.0
1,846,211	+		DZA65_RS08715	0.80	-1.7
1,846,212	-		DZA65_RS08715	0.80	+2.1
1,846,212	-		DZA65_RS08715	0.80	-0.2
1,846,220	+		DZA65_RS08715	0.81	+0.1
1,846,220	+		DZA65_RS08715	0.81	+0.2
1,846,221	-		DZA65_RS08715	0.81	+0.4
1,846,221	-		DZA65_RS08715	0.81	+0.0
1,846,221	-		DZA65_RS08715	0.81	+2.0
1,846,221	-		DZA65_RS08715	0.81	-1.5
1,846,247	+		DZA65_RS08715	0.84	-0.3
1,846,247	+		DZA65_RS08715	0.84	+1.0
1,846,248	-		DZA65_RS08715	0.85	-0.3
1,846,248	-		DZA65_RS08715	0.85	+1.4
1,846,323	+				+1.2
1,846,324	-				-0.7
1,846,378	+				+2.7
1,846,378	+				+0.7
1,846,378	+				-1.6
1,846,379	-				+2.2
1,846,437	+				+2.6
1,846,437	+				+0.7
1,846,515	+				+1.5
1,846,515	+				+0.7
1,846,516	-				+3.0
1,846,516	-				+1.5
1,846,516	-				-1.3
1,846,519	+				+0.7