Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05395

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,109,004	+				+1.9
1,109,005	-				+1.6
1,109,005	-				-0.3
1,109,005	-				+1.1
1,109,120	+		DZA65_RS05390	0.22	+0.9
1,109,120	+		DZA65_RS05390	0.22	-1.3
1,109,120	+		DZA65_RS05390	0.22	-0.9
1,109,120	+		DZA65_RS05390	0.22	+0.8
1,109,121	-		DZA65_RS05390	0.22	+1.2
1,109,121	-		DZA65_RS05390	0.22	+0.9
1,109,121	-		DZA65_RS05390	0.22	-0.6
1,109,121	-		DZA65_RS05390	0.22	+1.7
1,109,185	+		DZA65_RS05390	0.29	+1.3
1,109,273	+		DZA65_RS05390	0.39	-0.6
1,109,396	+		DZA65_RS05390	0.52	+2.6
1,109,405	+		DZA65_RS05390	0.53	+1.3
1,109,474	-		DZA65_RS05390	0.60	-0.1
1,109,482	+		DZA65_RS05390	0.61	+0.7
1,109,482	+		DZA65_RS05390	0.61	+1.4
1,109,482	+		DZA65_RS05390	0.61	-2.2
1,109,482	+		DZA65_RS05390	0.61	-1.1
1,109,482	+		DZA65_RS05390	0.61	+0.2
1,109,482	+		DZA65_RS05390	0.61	+2.1
1,109,482	+		DZA65_RS05390	0.61	+0.8
1,109,482	+		DZA65_RS05390	0.61	-0.1
1,109,483	-		DZA65_RS05390	0.61	-0.1
1,109,483	-		DZA65_RS05390	0.61	+0.5
1,109,483	-		DZA65_RS05390	0.61	+0.9
1,109,522	+		DZA65_RS05390	0.65	+0.6
1,109,522	+		DZA65_RS05390	0.65	+1.8
1,109,522	+		DZA65_RS05390	0.65	-1.1
1,109,522	+		DZA65_RS05390	0.65	+0.2
1,109,523	-		DZA65_RS05390	0.65	+1.3
1,109,523	-		DZA65_RS05390	0.65	+0.7
1,109,524	+		DZA65_RS05390	0.66	-1.4
1,109,551	+		DZA65_RS05390	0.69	+0.5
1,109,551	+		DZA65_RS05390	0.69	+1.3
1,109,552	-		DZA65_RS05390	0.69	+0.0
1,109,552	-		DZA65_RS05390	0.69	-0.3
1,109,717	+		DZA65_RS05390	0.86	-0.4
1,109,757	+				+0.6
1,109,757	+				+1.9
1,109,757	+				+0.0
1,109,830	+				+0.5
1,109,830	+				+0.8
1,109,830	+				+1.9
1,109,830	+				+0.7
1,109,830	+				+1.8
1,109,830	+				+0.8
1,109,830	+				+1.2
1,109,830	+				-2.1
1,109,831	-				+0.1
1,109,831	-				-0.1
1,109,831	-				+2.4
1,109,831	-				-0.6
1,109,831	-				+0.4
1,109,831	-				+1.5
1,109,831	-				+1.8
1,109,831	-				+1.8
1,109,831	-				-1.6
1,109,923	+				+1.3
1,109,923	+				-0.2
1,109,923	+				-0.6
1,109,923	+				-0.1
1,109,923	+				+0.4
1,109,924	-				-3.2
1,109,924	-				+0.0
1,109,924	-				+0.2
1,109,924	-				-0.4
1,109,924	-				-0.1
1,109,924	-				+0.9
1,109,925	+				+1.4
1,109,925	+				-1.6
1,109,925	+				+1.2
1,109,925	+				+0.9
1,109,925	+				+0.3
1,109,925	+				-0.1
1,109,925	+				-0.2
1,109,925	+				-0.6
1,109,925	+				-2.1
1,109,925	+				-3.3
1,109,925	+				+2.3
1,109,925	+				+1.2
1,109,926	-				-2.8
1,109,926	-				+0.5
1,109,926	-				+0.9
1,109,926	-				-0.5
1,109,932	+				+1.2
1,109,932	+				-1.2
1,109,932	+				+1.2
1,109,932	+				-0.1
1,109,932	+				+0.1
1,109,933	-				-0.6
1,109,933	-				-0.1
1,109,965	+				+1.7
1,109,965	+				-0.6
1,109,965	+				-0.8
1,109,965	+				+0.6
1,109,966	-				-1.2
1,109,966	-				-2.5
1,109,966	-				-0.6
1,109,966	-				+0.8
1,109,991	+		DZA65_RS05395	0.12	-1.4
1,109,991	+		DZA65_RS05395	0.12	-2.9
1,109,991	+		DZA65_RS05395	0.12	+1.1
1,109,991	+		DZA65_RS05395	0.12	+1.4
1,109,991	+		DZA65_RS05395	0.12	-0.5
1,109,991	+		DZA65_RS05395	0.12	+0.6
1,109,991	+		DZA65_RS05395	0.12	-1.6
1,109,992	-		DZA65_RS05395	0.13	+1.5
1,109,992	-		DZA65_RS05395	0.13	-1.6
1,109,992	-		DZA65_RS05395	0.13	-1.3
1,109,992	-		DZA65_RS05395	0.13	+0.4
1,109,992	-		DZA65_RS05395	0.13	-0.3
1,110,029	+		DZA65_RS05395	0.22	+0.7
1,110,030	-		DZA65_RS05395	0.22	-0.4
1,110,150	+		DZA65_RS05395	0.53	+0.7
1,110,151	-		DZA65_RS05395	0.54	-0.1
1,110,204	+		DZA65_RS05395	0.67	-0.9
1,110,204	+		DZA65_RS05395	0.67	-0.0
1,110,204	+		DZA65_RS05395	0.67	+1.3
1,110,232	+		DZA65_RS05395	0.75	+0.4
1,110,232	+		DZA65_RS05395	0.75	+0.4
1,110,233	-		DZA65_RS05395	0.75	-0.6
1,110,233	-				+0.9
1,110,233	-		DZA65_RS05395	0.75	-1.3
1,110,238	+		DZA65_RS05395	0.76	-1.1
1,110,238	+		DZA65_RS05395	0.76	-0.4
1,110,238	+		DZA65_RS05395	0.76	+1.8
1,110,239	-		DZA65_RS05395	0.76	+0.0
1,110,239	-		DZA65_RS05395	0.76	+0.9
1,110,286	+		DZA65_RS05395	0.89	+0.2
1,110,287	-		DZA65_RS05395	0.89	+0.3
1,110,287	-		DZA65_RS05395	0.89	-0.5
1,110,287	-		DZA65_RS05395	0.89	+1.7
1,110,292	+				-1.4
1,110,293	-				-0.4
1,110,293	-				-1.1
1,110,293	-				-0.3
1,110,304	+				+1.1
1,110,304	+				+1.1
1,110,305	-				-1.2
1,110,305	-				-0.2
1,110,305	-				-1.9
1,110,327	+				+0.7
1,110,327	+				+0.1
1,110,327	+				+0.9
1,110,328	-				+0.6
1,110,328	-				+0.4
1,110,336	+				+0.9
1,110,336	+				+1.2
1,110,336	+				-1.6
1,110,337	-				+2.5
1,110,337	-				-2.6
1,110,409	+				+0.7
1,110,410	-				-2.2
1,110,411	+				-0.4
1,110,411	+				-0.4
1,110,411	+				-0.1
1,110,412	-				-0.4
1,110,412	-				+0.1
1,110,412	-				+0.5
1,110,418	+				+1.5
1,110,419	-				+1.3
1,110,419	-				+0.9
1,110,435	-				-1.1
1,110,435	-				-1.6
1,110,441	+		DZA65_RS05400	0.10	+1.3
1,110,451	+		DZA65_RS05400	0.11	+0.5
1,110,451	+		DZA65_RS05400	0.11	+2.5
1,110,451	+		DZA65_RS05400	0.11	-0.2
1,110,451	+		DZA65_RS05400	0.11	+1.2
1,110,452	-		DZA65_RS05400	0.11	+0.5
1,110,452	-		DZA65_RS05400	0.11	+0.7
1,110,452	-		DZA65_RS05400	0.11	+0.4
1,110,452	-		DZA65_RS05400	0.11	+0.4
1,110,469	+		DZA65_RS05400	0.13	-0.5
1,110,469	+		DZA65_RS05400	0.13	-1.4
1,110,469	+		DZA65_RS05400	0.13	+0.2
1,110,469	+		DZA65_RS05400	0.13	-2.4
1,110,470	-		DZA65_RS05400	0.13	-0.2
1,110,506	+		DZA65_RS05400	0.16	+0.4
1,110,507	-		DZA65_RS05400	0.16	-1.6
1,110,545	+		DZA65_RS05400	0.19	+0.9
1,110,546	-		DZA65_RS05400	0.20	+0.2
1,110,546	-		DZA65_RS05400	0.20	-0.4
1,110,546	-		DZA65_RS05400	0.20	-0.9
1,110,546	-		DZA65_RS05400	0.20	+1.2
1,110,546	-		DZA65_RS05400	0.20	+0.6
1,110,786	+		DZA65_RS05400	0.41	-1.4
1,110,786	+		DZA65_RS05400	0.41	-0.4
1,110,786	+		DZA65_RS05400	0.41	+1.3
1,110,787	-		DZA65_RS05400	0.41	-1.4
1,110,787	-		DZA65_RS05400	0.41	+0.9
1,110,805	+		DZA65_RS05400	0.43	-0.2
1,110,805	+		DZA65_RS05400	0.43	+0.7
1,110,805	+		DZA65_RS05400	0.43	+0.6
1,110,805	+		DZA65_RS05400	0.43	+0.1
1,110,805	+		DZA65_RS05400	0.43	+0.4
1,110,805	+		DZA65_RS05400	0.43	-0.4
1,110,806	-		DZA65_RS05400	0.43	+0.4
1,110,806	-		DZA65_RS05400	0.43	+2.4
1,110,806	-		DZA65_RS05400	0.43	-1.9
1,110,806	-		DZA65_RS05400	0.43	-1.2
1,110,820	+		DZA65_RS05400	0.44	+0.5
1,110,820	+		DZA65_RS05400	0.44	-2.2
1,110,820	+		DZA65_RS05400	0.44	-0.1
1,110,821	-		DZA65_RS05400	0.45	-0.2
1,110,821	-		DZA65_RS05400	0.45	+2.6
1,110,828	+		DZA65_RS05400	0.45	+0.4
1,110,844	+		DZA65_RS05400	0.47	+0.7
1,110,844	+		DZA65_RS05400	0.47	-1.6
1,110,844	+		DZA65_RS05400	0.47	+0.8
1,110,844	+		DZA65_RS05400	0.47	-1.4
1,110,844	+		DZA65_RS05400	0.47	-1.1
1,110,844	+		DZA65_RS05400	0.47	-1.1
1,110,844	+		DZA65_RS05400	0.47	-1.6
1,110,844	+				-0.6
1,110,845	-		DZA65_RS05400	0.47	-2.4
1,110,845	-		DZA65_RS05400	0.47	+0.9
1,110,845	-		DZA65_RS05400	0.47	+1.0
1,110,845	-		DZA65_RS05400	0.47	-0.8
1,110,845	-		DZA65_RS05400	0.47	+0.6
1,110,845	-		DZA65_RS05400	0.47	-2.4
1,110,845	-		DZA65_RS05400	0.47	+0.5
1,110,845	-		DZA65_RS05400	0.47	-0.2
1,110,847	-				+0.9
1,110,966	+		DZA65_RS05400	0.58	-3.8
1,110,967	-		DZA65_RS05400	0.58	+1.5
1,110,967	-		DZA65_RS05400	0.58	-1.4
1,110,967	-		DZA65_RS05400	0.58	-2.8
1,111,009	+		DZA65_RS05400	0.62	-1.4
1,111,010	-		DZA65_RS05400	0.62	-0.9
1,111,010	-		DZA65_RS05400	0.62	-2.1
1,111,029	+		DZA65_RS05400	0.63	+0.5
1,111,029	+		DZA65_RS05400	0.63	+0.1
1,111,030	-		DZA65_RS05400	0.63	-0.1
1,111,030	-		DZA65_RS05400	0.63	+1.6
1,111,030	-		DZA65_RS05400	0.63	+0.0
1,111,030	-		DZA65_RS05400	0.63	+0.2
1,111,140	+		DZA65_RS05400	0.73	+0.1
1,111,140	+		DZA65_RS05400	0.73	-0.9
1,111,140	+		DZA65_RS05400	0.73	+1.6
1,111,140	+		DZA65_RS05400	0.73	-0.1
1,111,141	-				-1.9
1,111,141	-		DZA65_RS05400	0.74	+0.1
1,111,141	-		DZA65_RS05400	0.74	-0.6
1,111,141	-		DZA65_RS05400	0.74	-1.6
1,111,141	-		DZA65_RS05400	0.74	-2.2
1,111,141	-		DZA65_RS05400	0.74	+0.9
1,111,141	-		DZA65_RS05400	0.74	-2.4
1,111,144	+		DZA65_RS05400	0.74	-1.1
1,111,144	+		DZA65_RS05400	0.74	+1.3
1,111,145	-		DZA65_RS05400	0.74	+1.1
1,111,145	-		DZA65_RS05400	0.74	+0.2
1,111,145	-		DZA65_RS05400	0.74	-1.5
1,111,145	-		DZA65_RS05400	0.74	+0.5
1,111,145	-		DZA65_RS05400	0.74	-0.6
1,111,162	-		DZA65_RS05400	0.75	-0.3
1,111,245	+		DZA65_RS05400	0.83	+0.2
1,111,245	+		DZA65_RS05400	0.83	-0.1
1,111,246	-		DZA65_RS05400	0.83	+0.5
1,111,246	-		DZA65_RS05400	0.83	+1.3
1,111,246	-		DZA65_RS05400	0.83	-0.2
1,111,246	-		DZA65_RS05400	0.83	-0.6