Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02085 and DZA65_RS02090 are separated by 43 nucleotides DZA65_RS02090 and DZA65_RS02095 are separated by 131 nucleotides DZA65_RS02095 and DZA65_RS02100 are separated by 95 nucleotides DZA65_RS02100 and DZA65_RS02105 are separated by 222 nucleotides
DZA65_RS02085: DZA65_RS02085 - dNTP triphosphohydrolase, at 460,229 to 461,446
_RS02085
DZA65_RS02090: DZA65_RS02090 - TIGR04141 family sporadically distributed protein, at 461,490 to 463,118
_RS02090
DZA65_RS02095: DZA65_RS02095 - helix-turn-helix transcriptional regulator, at 463,250 to 463,465
_RS02095
DZA65_RS02100: DZA65_RS02100 - transcriptional regulator, at 463,561 to 463,827
_RS02100
DZA65_RS02105: DZA65_RS02105 - AAA family ATPase, at 464,050 to 466,095
_RS02105
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 460.503 kb on + strand, within DZA65_RS02085 at 460.536 kb on + strand, within DZA65_RS02085 at 460.812 kb on + strand, within DZA65_RS02085 at 460.813 kb on - strand, within DZA65_RS02085 at 460.907 kb on + strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.986 kb on + strand, within DZA65_RS02085 at 460.987 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.105 kb on - strand, within DZA65_RS02085 at 461.112 kb on + strand, within DZA65_RS02085 at 461.131 kb on + strand, within DZA65_RS02085 at 461.134 kb on - strand, within DZA65_RS02085 at 461.150 kb on - strand, within DZA65_RS02085 at 461.166 kb on + strand at 461.274 kb on - strand, within DZA65_RS02085 at 461.275 kb on + strand, within DZA65_RS02085 at 461.279 kb on - strand, within DZA65_RS02085 at 461.281 kb on + strand, within DZA65_RS02085 at 461.282 kb on - strand, within DZA65_RS02085 at 461.302 kb on - strand, within DZA65_RS02085 at 461.305 kb on - strand, within DZA65_RS02085 at 461.338 kb on + strand at 461.390 kb on - strand at 461.434 kb on - strand at 461.528 kb on - strand at 461.528 kb on - strand at 461.632 kb on + strand at 461.751 kb on - strand, within DZA65_RS02090 at 461.895 kb on + strand, within DZA65_RS02090 at 461.896 kb on - strand, within DZA65_RS02090 at 461.904 kb on - strand, within DZA65_RS02090 at 461.931 kb on - strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.263 kb on - strand, within DZA65_RS02090 at 462.300 kb on - strand, within DZA65_RS02090 at 462.303 kb on + strand, within DZA65_RS02090 at 462.453 kb on - strand at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.489 kb on + strand, within DZA65_RS02090 at 462.492 kb on + strand, within DZA65_RS02090 at 462.493 kb on - strand, within DZA65_RS02090 at 462.621 kb on + strand, within DZA65_RS02090 at 462.678 kb on - strand, within DZA65_RS02090 at 462.679 kb on + strand, within DZA65_RS02090 at 463.000 kb on + strand at 463.025 kb on + strand at 463.026 kb on - strand at 463.252 kb on - strand at 463.401 kb on + strand, within DZA65_RS02095 at 463.402 kb on - strand at 463.402 kb on - strand, within DZA65_RS02095 at 463.402 kb on - strand, within DZA65_RS02095 at 463.402 kb on - strand, within DZA65_RS02095 at 463.488 kb on - strand at 463.488 kb on - strand at 463.488 kb on - strand at 463.491 kb on + strand at 463.491 kb on + strand at 463.491 kb on + strand at 463.492 kb on - strand at 463.492 kb on - strand at 463.501 kb on + strand at 463.501 kb on + strand at 463.502 kb on - strand at 463.502 kb on - strand at 463.516 kb on + strand at 463.519 kb on + strand at 463.519 kb on + strand at 463.520 kb on - strand at 463.520 kb on - strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.544 kb on + strand at 463.548 kb on + strand at 463.549 kb on - strand at 463.549 kb on - strand at 463.549 kb on - strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.561 kb on - strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.567 kb on - strand at 463.567 kb on - strand at 463.567 kb on - strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.685 kb on + strand, within DZA65_RS02100 at 463.686 kb on - strand, within DZA65_RS02100 at 463.686 kb on - strand, within DZA65_RS02100 at 463.762 kb on + strand, within DZA65_RS02100 at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.841 kb on - strand at 463.841 kb on - strand at 463.869 kb on - strand at 463.890 kb on - strand at 463.968 kb on + strand at 463.969 kb on - strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.976 kb on - strand at 463.976 kb on - strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.978 kb on - strand at 463.978 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 460,503 + DZA65_RS02085 0.22 -0.2 460,536 + DZA65_RS02085 0.25 +1.8 460,812 + DZA65_RS02085 0.48 +2.7 460,813 - DZA65_RS02085 0.48 -2.9 460,907 + DZA65_RS02085 0.56 -1.1 460,908 - DZA65_RS02085 0.56 -0.4 460,908 - DZA65_RS02085 0.56 +0.7 460,978 - DZA65_RS02085 0.61 +2.1 460,978 - DZA65_RS02085 0.61 +1.4 460,986 + DZA65_RS02085 0.62 +0.9 460,987 - DZA65_RS02085 0.62 +2.2 461,083 - DZA65_RS02085 0.70 +1.0 461,083 - DZA65_RS02085 0.70 +2.0 461,105 - DZA65_RS02085 0.72 +0.6 461,112 + DZA65_RS02085 0.72 +0.4 461,131 + DZA65_RS02085 0.74 +1.8 461,134 - DZA65_RS02085 0.74 +0.6 461,150 - DZA65_RS02085 0.76 -0.8 461,166 + -0.4 461,274 - DZA65_RS02085 0.86 +0.4 461,275 + DZA65_RS02085 0.86 -0.4 461,279 - DZA65_RS02085 0.86 +1.4 461,281 + DZA65_RS02085 0.86 +0.9 461,282 - DZA65_RS02085 0.86 +1.0 461,302 - DZA65_RS02085 0.88 -0.9 461,305 - DZA65_RS02085 0.88 -1.9 461,338 + -0.6 461,390 - +1.4 461,434 - +0.8 461,528 - -1.6 461,528 - +1.5 461,632 + +0.8 461,751 - DZA65_RS02090 0.16 +0.3 461,895 + DZA65_RS02090 0.25 +0.6 461,896 - DZA65_RS02090 0.25 +0.2 461,904 - DZA65_RS02090 0.25 -0.7 461,931 - DZA65_RS02090 0.27 -0.4 462,262 + DZA65_RS02090 0.47 -1.1 462,262 + DZA65_RS02090 0.47 -0.8 462,263 - DZA65_RS02090 0.47 +2.3 462,300 - DZA65_RS02090 0.50 +0.6 462,303 + DZA65_RS02090 0.50 +1.5 462,453 - +1.4 462,453 - DZA65_RS02090 0.59 +1.8 462,453 - DZA65_RS02090 0.59 +1.3 462,453 - DZA65_RS02090 0.59 +1.2 462,453 - DZA65_RS02090 0.59 +0.9 462,489 + DZA65_RS02090 0.61 +0.1 462,492 + DZA65_RS02090 0.62 -1.4 462,493 - DZA65_RS02090 0.62 -1.0 462,621 + DZA65_RS02090 0.69 -1.6 462,678 - DZA65_RS02090 0.73 -1.6 462,679 + DZA65_RS02090 0.73 +0.2 463,000 + +1.4 463,025 + +0.4 463,026 - -0.5 463,252 - +2.5 463,401 + DZA65_RS02095 0.70 -1.1 463,402 - -0.4 463,402 - DZA65_RS02095 0.70 +0.8 463,402 - DZA65_RS02095 0.70 +0.2 463,402 - DZA65_RS02095 0.70 -0.4 463,488 - -0.4 463,488 - -0.4 463,488 - +2.2 463,491 + -0.1 463,491 + -0.3 463,491 + +0.6 463,492 - +0.5 463,492 - -0.6 463,501 + -1.6 463,501 + +1.5 463,502 - -0.4 463,502 - -0.6 463,516 + +1.6 463,519 + -0.8 463,519 + +0.1 463,520 - -0.1 463,520 - +0.5 463,523 + +3.0 463,523 + +3.5 463,523 + +1.4 463,523 + -2.3 463,523 + +2.1 463,523 + +2.2 463,524 - -1.1 463,524 - +1.4 463,524 - -0.4 463,524 - -0.2 463,524 - -1.4 463,524 - +0.6 463,542 - -0.4 463,542 - +2.6 463,542 - +1.8 463,542 - -1.1 463,544 + +1.6 463,548 + -1.9 463,549 - -0.3 463,549 - -1.3 463,549 - -1.1 463,560 + +2.0 463,560 + +1.1 463,560 + +0.2 463,560 + +0.2 463,561 - +0.4 463,566 + +2.4 463,566 + +0.2 463,566 + +0.5 463,566 + -0.4 463,566 + +1.0 463,566 + +1.2 463,566 + -1.8 463,566 + -1.8 463,566 + +0.7 463,566 + +1.4 463,567 - +0.1 463,567 - +1.2 463,567 - -1.6 463,570 + +1.2 463,570 + -0.9 463,570 + +2.9 463,570 + -1.7 463,570 + -1.1 463,570 + +0.4 463,570 + +1.1 463,570 + -0.4 463,570 + +0.6 463,571 - +0.2 463,571 - -1.8 463,571 - -2.1 463,571 - +0.6 463,685 + DZA65_RS02100 0.46 -2.2 463,686 - DZA65_RS02100 0.47 -1.1 463,686 - DZA65_RS02100 0.47 -0.1 463,762 + DZA65_RS02100 0.75 -0.2 463,825 + -0.4 463,825 + +0.9 463,825 + -0.6 463,825 + +1.2 463,825 + -0.4 463,826 - -0.3 463,826 - +0.2 463,826 - -1.8 463,826 - +1.0 463,826 - +0.2 463,841 - +2.6 463,841 - -0.4 463,869 - +0.7 463,890 - +2.2 463,968 + -0.9 463,969 - +1.2 463,973 + +0.9 463,973 + +0.0 463,973 + +0.6 463,973 + -1.1 463,973 + -1.1 463,973 + -0.9 463,973 + -0.9 463,973 + -0.2 463,974 - +1.6 463,974 - +1.0 463,974 - +0.6 463,974 - -1.1 463,974 - -2.6 463,975 + -2.1 463,975 + -0.4 463,975 + +0.1 463,975 + -2.9 463,975 + -2.1 463,976 - +1.5 463,976 - +1.2 463,977 + -1.8 463,977 + +1.3 463,977 + -0.9 463,977 + -0.8 463,977 + +1.5 463,977 + -1.1 463,978 - -1.4 463,978 - +0.7 464,052 - +0.0 464,052 - -2.1 464,052 - +0.9 464,052 - -1.4
Or see this region's nucleotide sequence