Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01040 and DZA65_RS01045 overlap by 1 nucleotides DZA65_RS01045 and DZA65_RS01050 are separated by 41 nucleotides DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides
DZA65_RS01040: DZA65_RS01040 - Xaa-Pro dipeptidase, at 236,020 to 237,351
_RS01040
DZA65_RS01045: DZA65_RS01045 - IMPACT family protein, at 237,351 to 237,965
_RS01045
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
Position (kb) 238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 237.121 kb on + strand, within DZA65_RS01040 at 237.121 kb on + strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.133 kb on - strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.326 kb on + strand at 237.327 kb on - strand at 237.401 kb on + strand at 237.401 kb on + strand at 237.402 kb on - strand at 237.417 kb on - strand, within DZA65_RS01045 at 237.417 kb on - strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.590 kb on + strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.658 kb on - strand, within DZA65_RS01045 at 237.699 kb on + strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.850 kb on - strand, within DZA65_RS01045 at 237.923 kb on + strand at 237.923 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.992 kb on - strand at 237.992 kb on - strand at 237.992 kb on - strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.098 kb on - strand at 238.098 kb on - strand at 238.123 kb on + strand at 238.123 kb on + strand at 238.124 kb on - strand at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.221 kb on + strand, within DZA65_RS01050 at 238.222 kb on - strand, within DZA65_RS01050 at 238.487 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.627 kb on - strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.723 kb on + strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.744 kb on - strand, within DZA65_RS01050 at 238.837 kb on + strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.871 kb on - strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.899 kb on - strand at 238.899 kb on - strand, within DZA65_RS01050 at 238.899 kb on - strand, within DZA65_RS01050 at 238.948 kb on + strand, within DZA65_RS01050 at 239.032 kb on + strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.216 kb on + strand, within DZA65_RS01050 at 239.230 kb on + strand, within DZA65_RS01050 at 239.265 kb on + strand, within DZA65_RS01050 at 239.266 kb on - strand, within DZA65_RS01050 at 239.386 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.456 kb on + strand at 239.463 kb on + strand at 239.463 kb on + strand at 239.464 kb on - strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.488 kb on - strand at 240.014 kb on + strand at 240.075 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.105 kb on - strand at 240.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 237,121 + DZA65_RS01040 0.83 +0.9 237,121 + DZA65_RS01040 0.83 +0.7 237,122 - DZA65_RS01040 0.83 +0.2 237,122 - DZA65_RS01040 0.83 +0.2 237,133 - DZA65_RS01040 0.84 +1.3 237,165 + DZA65_RS01040 0.86 -1.8 237,165 + DZA65_RS01040 0.86 +1.3 237,181 + DZA65_RS01040 0.87 +1.0 237,181 + DZA65_RS01040 0.87 +1.3 237,181 + DZA65_RS01040 0.87 +2.5 237,181 + DZA65_RS01040 0.87 -0.7 237,181 + DZA65_RS01040 0.87 +0.3 237,181 + DZA65_RS01040 0.87 +1.3 237,182 - DZA65_RS01040 0.87 +0.7 237,182 - DZA65_RS01040 0.87 +1.2 237,182 - DZA65_RS01040 0.87 -0.7 237,182 - DZA65_RS01040 0.87 -2.3 237,182 - DZA65_RS01040 0.87 +2.3 237,182 - DZA65_RS01040 0.87 +2.4 237,182 - DZA65_RS01040 0.87 -0.7 237,182 - DZA65_RS01040 0.87 -0.3 237,182 - DZA65_RS01040 0.87 -1.1 237,182 - DZA65_RS01040 0.87 +0.8 237,326 + -0.3 237,327 - +1.2 237,401 + -0.7 237,401 + -0.7 237,402 - -1.7 237,417 - DZA65_RS01045 0.11 -0.3 237,417 - DZA65_RS01045 0.11 -1.7 237,516 + DZA65_RS01045 0.27 +2.1 237,516 + DZA65_RS01045 0.27 -1.7 237,516 + DZA65_RS01045 0.27 +1.8 237,516 + DZA65_RS01045 0.27 -0.7 237,516 + DZA65_RS01045 0.27 +2.8 237,516 + DZA65_RS01045 0.27 -0.1 237,516 + DZA65_RS01045 0.27 -1.5 237,516 + DZA65_RS01045 0.27 -1.5 237,517 - DZA65_RS01045 0.27 +0.6 237,517 - DZA65_RS01045 0.27 +0.3 237,517 - DZA65_RS01045 0.27 +2.4 237,517 - DZA65_RS01045 0.27 +0.3 237,517 - DZA65_RS01045 0.27 +0.6 237,517 - DZA65_RS01045 0.27 +1.8 237,517 - DZA65_RS01045 0.27 +1.5 237,590 + DZA65_RS01045 0.39 +0.5 237,591 - DZA65_RS01045 0.39 +0.2 237,591 - DZA65_RS01045 0.39 -0.3 237,591 - DZA65_RS01045 0.39 +1.3 237,649 + DZA65_RS01045 0.48 +0.0 237,649 + DZA65_RS01045 0.48 -1.2 237,649 + DZA65_RS01045 0.48 +1.0 237,649 + DZA65_RS01045 0.48 +1.9 237,650 - DZA65_RS01045 0.49 +0.6 237,650 - DZA65_RS01045 0.49 -1.5 237,650 - DZA65_RS01045 0.49 +0.2 237,650 - DZA65_RS01045 0.49 +1.9 237,650 - DZA65_RS01045 0.49 -1.5 237,650 - DZA65_RS01045 0.49 +2.1 237,650 - DZA65_RS01045 0.49 +3.4 237,654 + DZA65_RS01045 0.49 +0.8 237,654 + DZA65_RS01045 0.49 -0.7 237,654 + DZA65_RS01045 0.49 -0.0 237,654 + DZA65_RS01045 0.49 -1.2 237,655 - DZA65_RS01045 0.49 +1.3 237,655 - DZA65_RS01045 0.49 -2.0 237,655 - DZA65_RS01045 0.49 -0.1 237,657 + DZA65_RS01045 0.50 +0.8 237,657 + DZA65_RS01045 0.50 +0.1 237,658 - DZA65_RS01045 0.50 -0.0 237,699 + DZA65_RS01045 0.57 +0.4 237,700 - DZA65_RS01045 0.57 +0.7 237,700 - DZA65_RS01045 0.57 +4.7 237,783 + DZA65_RS01045 0.70 -1.3 237,783 + DZA65_RS01045 0.70 -1.7 237,783 + DZA65_RS01045 0.70 +1.1 237,783 + DZA65_RS01045 0.70 +0.5 237,783 + DZA65_RS01045 0.70 -0.4 237,849 + DZA65_RS01045 0.81 -0.8 237,849 + DZA65_RS01045 0.81 +1.7 237,849 + DZA65_RS01045 0.81 +0.6 237,850 - DZA65_RS01045 0.81 -0.4 237,923 + +0.6 237,923 + -2.2 237,963 + +0.5 237,963 + -0.0 237,963 + +0.2 237,964 - -1.5 237,964 - +0.3 237,964 - +0.7 237,991 + +0.8 237,991 + -1.2 237,991 + +1.0 237,991 + -1.0 237,991 + -1.9 237,991 + -2.2 237,992 - -2.0 237,992 - +1.3 237,992 - +0.7 238,097 + -0.7 238,097 + -1.9 238,097 + +0.7 238,098 - -0.7 238,098 - -3.8 238,123 + -0.3 238,123 + -0.2 238,124 - -0.1 238,181 - DZA65_RS01050 0.12 +0.4 238,181 - DZA65_RS01050 0.12 -1.2 238,181 - DZA65_RS01050 0.12 -0.6 238,181 - DZA65_RS01050 0.12 +0.1 238,218 + DZA65_RS01050 0.15 -2.3 238,218 + DZA65_RS01050 0.15 -0.5 238,218 + DZA65_RS01050 0.15 -0.3 238,218 + DZA65_RS01050 0.15 -1.3 238,219 - DZA65_RS01050 0.15 +0.3 238,219 - DZA65_RS01050 0.15 +0.3 238,219 - DZA65_RS01050 0.15 -2.8 238,221 + DZA65_RS01050 0.15 -1.0 238,222 - DZA65_RS01050 0.15 -3.0 238,487 + DZA65_RS01050 0.33 -1.0 238,522 + DZA65_RS01050 0.35 -0.1 238,522 + DZA65_RS01050 0.35 -0.9 238,523 - DZA65_RS01050 0.36 +0.7 238,523 - DZA65_RS01050 0.36 -1.5 238,523 - DZA65_RS01050 0.36 -1.0 238,523 - DZA65_RS01050 0.36 -0.3 238,571 + DZA65_RS01050 0.39 -0.7 238,571 + DZA65_RS01050 0.39 -0.3 238,571 + DZA65_RS01050 0.39 -1.5 238,571 + DZA65_RS01050 0.39 -1.2 238,572 - DZA65_RS01050 0.39 -2.0 238,572 - DZA65_RS01050 0.39 -1.5 238,575 + DZA65_RS01050 0.39 +0.6 238,575 + DZA65_RS01050 0.39 -0.7 238,575 + DZA65_RS01050 0.39 +1.3 238,576 - DZA65_RS01050 0.39 +0.2 238,576 - DZA65_RS01050 0.39 +1.6 238,576 - DZA65_RS01050 0.39 -1.0 238,576 - DZA65_RS01050 0.39 -3.0 238,627 - DZA65_RS01050 0.43 +0.4 238,720 + DZA65_RS01050 0.49 +0.9 238,720 + DZA65_RS01050 0.49 +2.0 238,720 + DZA65_RS01050 0.49 +1.7 238,723 + DZA65_RS01050 0.49 -1.0 238,724 - DZA65_RS01050 0.49 -0.6 238,724 - DZA65_RS01050 0.49 +0.4 238,724 - DZA65_RS01050 0.49 -1.7 238,744 - DZA65_RS01050 0.51 -0.4 238,837 + DZA65_RS01050 0.57 -0.8 238,838 - DZA65_RS01050 0.57 -1.5 238,838 - DZA65_RS01050 0.57 +1.3 238,871 - DZA65_RS01050 0.60 +0.6 238,898 + DZA65_RS01050 0.61 -0.9 238,898 + DZA65_RS01050 0.61 -2.7 238,898 + DZA65_RS01050 0.61 -0.7 238,898 + DZA65_RS01050 0.61 +1.3 238,898 + DZA65_RS01050 0.61 -0.6 238,899 - -0.6 238,899 - DZA65_RS01050 0.61 +1.3 238,899 - DZA65_RS01050 0.61 -1.2 238,948 + DZA65_RS01050 0.65 -1.0 239,032 + DZA65_RS01050 0.71 +0.7 239,089 - DZA65_RS01050 0.75 -0.1 239,089 - DZA65_RS01050 0.75 +1.9 239,144 + DZA65_RS01050 0.78 -0.7 239,144 + DZA65_RS01050 0.78 -1.5 239,144 + DZA65_RS01050 0.78 -0.5 239,145 - DZA65_RS01050 0.78 -2.3 239,145 - DZA65_RS01050 0.78 -0.7 239,145 - DZA65_RS01050 0.78 +0.6 239,146 + DZA65_RS01050 0.78 +0.5 239,146 + DZA65_RS01050 0.78 +1.9 239,146 + DZA65_RS01050 0.78 +1.1 239,147 - DZA65_RS01050 0.79 +1.3 239,147 - DZA65_RS01050 0.79 -1.0 239,147 - DZA65_RS01050 0.79 +0.4 239,152 + DZA65_RS01050 0.79 -0.4 239,152 + DZA65_RS01050 0.79 -1.3 239,153 - DZA65_RS01050 0.79 +0.3 239,153 - DZA65_RS01050 0.79 +0.6 239,153 - DZA65_RS01050 0.79 -0.7 239,216 + DZA65_RS01050 0.83 +0.8 239,230 + DZA65_RS01050 0.84 +0.9 239,265 + DZA65_RS01050 0.87 +2.7 239,266 - DZA65_RS01050 0.87 +1.7 239,386 + +0.5 239,419 + -0.3 239,419 + +1.8 239,419 + +2.0 239,420 - +0.5 239,420 - -0.7 239,420 - -0.1 239,430 + -1.5 239,430 + +1.3 239,430 + +0.6 239,431 - +1.9 239,431 - -2.2 239,431 - -0.3 239,434 + -0.1 239,434 + +1.3 239,435 - -2.2 239,435 - -1.5 239,435 - -2.2 239,456 + +2.4 239,463 + +1.0 239,463 + +1.3 239,464 - +1.2 239,476 + -0.7 239,476 + +1.3 239,476 + +0.9 239,477 - +0.3 239,477 - -1.3 239,477 - -0.0 239,477 - -1.3 239,477 - +0.2 239,487 + -1.0 239,487 + -1.0 239,487 + -0.1 239,488 - +0.2 240,014 + +2.0 240,075 - +3.3 240,103 - -0.5 240,103 - -0.1 240,103 - +0.1 240,103 - +0.6 240,103 - -2.3 240,103 - +0.1 240,103 - -0.5 240,103 - +2.5 240,105 - +1.6 240,105 - -0.7
Or see this region's nucleotide sequence