Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20190

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,374,435	+		DZA65_RS20180	0.86	-0.2
4,374,435	+		DZA65_RS20180	0.86	-0.7
4,374,435	+		DZA65_RS20180	0.86	-1.4
4,374,435	+		DZA65_RS20180	0.86	-0.4
4,374,435	+		DZA65_RS20180	0.86	+0.0
4,374,435	+		DZA65_RS20180	0.86	+0.2
4,374,435	+		DZA65_RS20180	0.86	+2.2
4,374,436	-		DZA65_RS20180	0.86	-0.8
4,374,436	-		DZA65_RS20180	0.86	+2.2
4,374,436	-		DZA65_RS20180	0.86	-2.2
4,374,436	-		DZA65_RS20180	0.86	+0.2
4,374,547	+				+1.2
4,374,547	+				-0.8
4,374,547	+				-1.9
4,374,548	-				-0.5
4,374,548	-				-2.9
4,374,548	-				-0.5
4,374,548	-				-1.6
4,374,548	-				-0.8
4,374,577	+				-2.6
4,374,577	+				-0.4
4,374,577	+				-0.9
4,374,622	+				-0.8
4,374,623	-				+2.0
4,374,679	+				-0.9
4,374,679	+				-0.8
4,374,680	-				-2.0
4,374,712	+				-1.4
4,374,749	+		DZA65_RS20185	0.11	+1.4
4,374,749	+		DZA65_RS20185	0.11	-0.4
4,374,749	+		DZA65_RS20185	0.11	-1.8
4,374,749	+		DZA65_RS20185	0.11	+0.2
4,374,749	+		DZA65_RS20185	0.11	+0.5
4,374,749	+		DZA65_RS20185	0.11	-1.9
4,374,749	+		DZA65_RS20185	0.11	+0.8
4,374,749	+		DZA65_RS20185	0.11	+0.1
4,374,749	+		DZA65_RS20185	0.11	+0.2
4,374,749	+		DZA65_RS20185	0.11	+0.2
4,374,750	-		DZA65_RS20185	0.11	-1.4
4,374,750	-		DZA65_RS20185	0.11	+0.8
4,374,750	-		DZA65_RS20185	0.11	-1.6
4,374,750	-		DZA65_RS20185	0.11	+1.8
4,374,750	-		DZA65_RS20185	0.11	-1.5
4,374,750	-		DZA65_RS20185	0.11	+0.6
4,374,761	+		DZA65_RS20185	0.12	-0.4
4,374,761	+		DZA65_RS20185	0.12	-0.7
4,374,761	+		DZA65_RS20185	0.12	-2.5
4,374,762	-		DZA65_RS20185	0.12	-1.2
4,374,762	-		DZA65_RS20185	0.12	-0.4
4,374,762	-		DZA65_RS20185	0.12	-2.2
4,374,763	+		DZA65_RS20185	0.13	+4.9
4,374,764	-		DZA65_RS20185	0.13	-1.4
4,374,797	+		DZA65_RS20185	0.17	-0.3
4,374,797	+		DZA65_RS20185	0.17	-0.8
4,374,798	-		DZA65_RS20185	0.17	+0.2
4,374,798	-		DZA65_RS20185	0.17	-1.1
4,374,831	-		DZA65_RS20185	0.22	-0.5
4,374,904	+		DZA65_RS20185	0.32	+0.6
4,374,904	+		DZA65_RS20185	0.32	-1.8
4,374,904	+		DZA65_RS20185	0.32	-0.1
4,374,905	-		DZA65_RS20185	0.32	-0.5
4,374,905	-		DZA65_RS20185	0.32	-1.7
4,374,905	-		DZA65_RS20185	0.32	-0.4
4,374,923	+		DZA65_RS20185	0.34	+0.1
4,374,924	-		DZA65_RS20185	0.34	+0.2
4,375,028	+		DZA65_RS20185	0.49	-1.1
4,375,028	+		DZA65_RS20185	0.49	+1.2
4,375,028	+		DZA65_RS20185	0.49	-0.7
4,375,028	+		DZA65_RS20185	0.49	-1.0
4,375,028	+		DZA65_RS20185	0.49	-1.6
4,375,029	-		DZA65_RS20185	0.49	+1.2
4,375,029	-		DZA65_RS20185	0.49	+0.5
4,375,029	-		DZA65_RS20185	0.49	-2.1
4,375,029	-		DZA65_RS20185	0.49	-1.8
4,375,029	-		DZA65_RS20185	0.49	+0.2
4,375,029	-		DZA65_RS20185	0.49	-0.1
4,375,097	+		DZA65_RS20185	0.58	+1.2
4,375,097	+		DZA65_RS20185	0.58	-1.1
4,375,097	+		DZA65_RS20185	0.58	+0.0
4,375,097	+		DZA65_RS20185	0.58	-1.1
4,375,097	+		DZA65_RS20185	0.58	+1.8
4,375,098	-		DZA65_RS20185	0.58	+0.3
4,375,098	-		DZA65_RS20185	0.58	-0.1
4,375,098	-		DZA65_RS20185	0.58	-1.1
4,375,098	-		DZA65_RS20185	0.58	+1.6
4,375,136	+		DZA65_RS20185	0.63	-0.9
4,375,136	+		DZA65_RS20185	0.63	-1.1
4,375,137	-		DZA65_RS20185	0.63	+1.0
4,375,285	+		DZA65_RS20185	0.84	-0.4
4,375,285	+		DZA65_RS20185	0.84	+0.2
4,375,286	-		DZA65_RS20185	0.84	-0.6
4,375,298	+		DZA65_RS20185	0.85	-0.7
4,375,383	+				+1.8
4,375,383	+				+0.6
4,375,383	+				-1.6
4,375,384	-				+0.2
4,375,392	+				-0.4
4,375,392	+				+0.5
4,375,392	+				+1.5
4,375,392	+				-0.6
4,375,392	+				-0.8
4,375,392	+				+2.8
4,375,392	+				-0.2
4,375,392	+				+0.1
4,375,392	+				+0.8
4,375,392	+				+0.1
4,375,392	+				-0.8
4,375,393	-				-0.8
4,375,393	-				-1.4
4,375,393	-				-0.4
4,375,393	-				-1.1
4,375,393	-				-0.7
4,375,393	-				+1.8
4,375,393	-				+0.6
4,375,393	-				-0.8
4,375,403	+				+1.9
4,375,403	+				-2.6
4,375,432	+				+0.3
4,375,432	+				-0.4
4,375,432	+				+1.2
4,375,433	-				-1.1
4,375,439	+				-0.4
4,375,439	+				+0.6
4,375,439	+				-2.4
4,375,439	+				-1.1
4,375,439	+				+2.1
4,375,440	-				-0.8
4,375,440	-				+0.4
4,375,440	-				-0.7
4,375,440	-				+2.4
4,375,440	-				+0.9
4,375,440	-				+0.2
4,375,493	+		DZA65_RS20190	0.19	+0.2
4,375,493	+		DZA65_RS20190	0.19	+0.0
4,375,493	+		DZA65_RS20190	0.19	-0.5
4,375,493	+		DZA65_RS20190	0.19	-0.4
4,375,493	+		DZA65_RS20190	0.19	-0.4
4,375,493	+		DZA65_RS20190	0.19	-0.8
4,375,494	-		DZA65_RS20190	0.19	+1.0
4,375,494	-		DZA65_RS20190	0.19	+1.8
4,375,494	-		DZA65_RS20190	0.19	+0.6
4,375,494	-		DZA65_RS20190	0.19	-0.8
4,375,494	-		DZA65_RS20190	0.19	-0.0
4,375,494	-		DZA65_RS20190	0.19	-2.5
4,375,494	-		DZA65_RS20190	0.19	-0.3
4,375,495	+		DZA65_RS20190	0.19	-1.6
4,375,496	-		DZA65_RS20190	0.20	+0.4
4,375,623	+		DZA65_RS20190	0.52	-1.4
4,375,623	+		DZA65_RS20190	0.52	-0.7
4,375,623	+		DZA65_RS20190	0.52	-1.1
4,375,623	+		DZA65_RS20190	0.52	-1.1
4,375,637	-		DZA65_RS20190	0.55	-0.7
4,375,637	-		DZA65_RS20190	0.55	-2.2
4,375,637	-		DZA65_RS20190	0.55	-0.8
4,375,637	-		DZA65_RS20190	0.55	+1.1
4,375,637	-		DZA65_RS20190	0.55	+1.8
4,375,706	-		DZA65_RS20190	0.73	-0.2
4,375,706	-		DZA65_RS20190	0.73	+0.0
4,375,978	+		DZA65_RS20195	0.42	-2.6
4,375,978	+		DZA65_RS20195	0.42	+0.5
4,375,978	+		DZA65_RS20195	0.42	+1.7
4,375,979	-		DZA65_RS20195	0.42	-1.4
4,375,979	-		DZA65_RS20195	0.42	-0.9
4,375,979	-		DZA65_RS20195	0.42	+0.2
4,375,979	-		DZA65_RS20195	0.42	+2.0
4,375,979	-		DZA65_RS20195	0.42	-1.1
4,376,070	+		DZA65_RS20195	0.68	+1.4
4,376,071	-		DZA65_RS20195	0.68	+0.6
4,376,071	-		DZA65_RS20195	0.68	-1.1
4,376,128	+		DZA65_RS20195	0.84	+0.4
4,376,128	+		DZA65_RS20195	0.84	+1.6
4,376,160	+				-1.5
4,376,160	+				-1.1
4,376,161	-				-0.2
4,376,174	+				-0.3
4,376,174	+				-1.1
4,376,174	+				-0.7
4,376,174	+				-1.8
4,376,175	-				+0.3
4,376,175	-				-1.8
4,376,182	+				-0.1
4,376,182	+				-0.6
4,376,182	+				+0.2
4,376,182	+				-0.4
4,376,182	+				-0.8
4,376,182	+				-0.5
4,376,182	+				-0.8
4,376,182	+				-0.1
4,376,182	+				+0.2
4,376,182	+				+1.2
4,376,183	-				-1.9
4,376,183	-				-2.2
4,376,183	-				+1.2
4,376,183	-				-1.6
4,376,183	-				-0.3
4,376,183	-				+0.3
4,376,183	-				+0.5
4,376,183	-				+2.2
4,376,183	-				-1.1
4,376,183	-				-0.5
4,376,190	+				-1.0
4,376,190	+				-0.9
4,376,190	+				+1.0
4,376,230	+				+0.0
4,376,230	+				+1.0
4,376,231	-				-2.8
4,376,231	-				-0.8
4,376,273	+				+1.6
4,376,273	+				-1.1
4,376,273	+				-0.3
4,376,273	+				-0.1
4,376,274	-				-0.8
4,376,274	-				-1.4
4,376,274	-				-0.6
4,376,290	+				+1.7
4,376,325	-				-3.1
4,376,342	+				-0.8
4,376,342	+				-0.4
4,376,343	-				-0.0
4,376,343	-				-2.4
4,376,343	-				+0.2
4,376,343	-				-0.8
4,376,359	+				-0.2
4,376,359	+				-0.9
4,376,360	-				+1.2
4,376,394	+				+0.8
4,376,394	+				-0.1
4,376,395	-				+2.0
4,376,395	-				+0.2
4,376,395	-				-0.7
4,376,444	-				+0.9
4,376,458	+				-0.6
4,376,458	+				+2.2
4,376,458	+				+0.2
4,376,458	+				+0.8
4,376,459	-				-0.2
4,376,459	-				-0.4
4,376,480	+				-1.4
4,376,480	+				-0.5
4,376,480	+				-0.6
4,376,519	+				-1.4
4,376,520	-				-0.1
4,376,525	+				-0.0
4,376,525	+				+0.6
4,376,545	-				-0.9
4,376,570	-				-0.8
4,376,601	+		DZA65_RS20200	0.18	-1.4
4,376,601	+		DZA65_RS20200	0.18	-1.0
4,376,601	+		DZA65_RS20200	0.18	-0.6
4,376,601	+		DZA65_RS20200	0.18	-0.6
4,376,602	-		DZA65_RS20200	0.19	+0.5
4,376,602	-		DZA65_RS20200	0.19	-0.3
4,376,602	-		DZA65_RS20200	0.19	-0.1
4,376,603	+		DZA65_RS20200	0.19	+0.1
4,376,604	-		DZA65_RS20200	0.19	+0.6
4,376,604	-		DZA65_RS20200	0.19	+1.2
4,376,631	+		DZA65_RS20200	0.27	-2.0
4,376,631	+		DZA65_RS20200	0.27	+0.1
4,376,664	+		DZA65_RS20200	0.36	-1.4
4,376,665	-		DZA65_RS20200	0.36	-0.5
4,376,668	+		DZA65_RS20200	0.37	+0.5
4,376,668	+		DZA65_RS20200	0.37	-1.0
4,376,669	-		DZA65_RS20200	0.38	+1.2
4,376,669	-		DZA65_RS20200	0.38	-0.3
4,376,669	-		DZA65_RS20200	0.38	-0.4
4,376,718	+		DZA65_RS20200	0.51	-1.1
4,376,719	-		DZA65_RS20200	0.52	-3.0
4,376,745	-		DZA65_RS20200	0.59	+1.2
4,376,758	+		DZA65_RS20200	0.63	+0.9
4,376,758	+		DZA65_RS20200	0.63	-1.5
4,376,758	+		DZA65_RS20200	0.63	+0.2
4,376,793	+		DZA65_RS20200	0.73	+1.2
4,376,793	+		DZA65_RS20200	0.73	+1.1
4,376,793	+		DZA65_RS20200	0.73	-0.5
4,376,793	+		DZA65_RS20200	0.73	-1.0
4,376,793	+		DZA65_RS20200	0.73	+1.1
4,376,794	-		DZA65_RS20200	0.73	-1.1