Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19315

Experiment: Stem-Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS19310 and DZA65_RS19315 are separated by 64 nucleotidesDZA65_RS19315 and DZA65_RS19320 are separated by 64 nucleotides DZA65_RS19310: DZA65_RS19310 - RNA polymerase-associated protein RapA, at 4,174,136 to 4,177,081 _RS19310 DZA65_RS19315: DZA65_RS19315 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,177,146 to 4,177,799 _RS19315 DZA65_RS19320: DZA65_RS19320 - co-chaperone DjlA, at 4,177,864 to 4,178,910 _RS19320 Position (kb) 4177 4178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4176.172 kb on + strand, within DZA65_RS19310at 4176.304 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.409 kb on + strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.410 kb on - strand, within DZA65_RS19310at 4176.630 kb on + strand, within DZA65_RS19310at 4176.630 kb on + strand, within DZA65_RS19310at 4176.630 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strand, within DZA65_RS19310at 4176.632 kb on + strandat 4176.632 kb on + strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4176.633 kb on - strand, within DZA65_RS19310at 4177.079 kb on + strandat 4177.080 kb on - strandat 4177.080 kb on - strandat 4177.097 kb on + strandat 4177.097 kb on + strandat 4177.097 kb on + strandat 4177.097 kb on + strandat 4177.097 kb on + strandat 4177.098 kb on - strandat 4177.098 kb on - strandat 4177.100 kb on + strandat 4177.100 kb on + strandat 4177.100 kb on + strandat 4177.101 kb on - strandat 4177.101 kb on - strandat 4177.155 kb on + strandat 4177.155 kb on + strandat 4177.155 kb on + strandat 4177.155 kb on + strandat 4177.155 kb on + strandat 4177.155 kb on + strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.156 kb on - strandat 4177.181 kb on - strandat 4177.191 kb on + strandat 4177.191 kb on + strandat 4177.425 kb on + strand, within DZA65_RS19315at 4177.471 kb on + strand, within DZA65_RS19315at 4177.471 kb on + strand, within DZA65_RS19315at 4177.472 kb on - strand, within DZA65_RS19315at 4177.472 kb on - strand, within DZA65_RS19315at 4177.556 kb on + strand, within DZA65_RS19315at 4177.557 kb on - strand, within DZA65_RS19315at 4177.557 kb on - strand, within DZA65_RS19315at 4177.557 kb on - strand, within DZA65_RS19315at 4177.630 kb on + strand, within DZA65_RS19315at 4177.681 kb on - strand, within DZA65_RS19315at 4177.681 kb on - strand, within DZA65_RS19315at 4177.761 kb on - strandat 4177.887 kb on + strandat 4177.923 kb on + strandat 4177.923 kb on + strandat 4177.923 kb on + strandat 4177.924 kb on - strandat 4177.955 kb on - strandat 4178.001 kb on + strand, within DZA65_RS19320at 4178.002 kb on - strand, within DZA65_RS19320at 4178.002 kb on - strand, within DZA65_RS19320at 4178.006 kb on + strand, within DZA65_RS19320at 4178.112 kb on - strand, within DZA65_RS19320at 4178.147 kb on + strand, within DZA65_RS19320at 4178.148 kb on - strand, within DZA65_RS19320at 4178.222 kb on + strand, within DZA65_RS19320at 4178.222 kb on + strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.223 kb on - strand, within DZA65_RS19320at 4178.318 kb on + strand, within DZA65_RS19320at 4178.318 kb on + strand, within DZA65_RS19320at 4178.318 kb on + strand, within DZA65_RS19320at 4178.318 kb on + strand, within DZA65_RS19320at 4178.319 kb on - strand, within DZA65_RS19320at 4178.319 kb on - strand, within DZA65_RS19320at 4178.319 kb on - strand, within DZA65_RS19320at 4178.386 kb on - strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.444 kb on + strand, within DZA65_RS19320at 4178.445 kb on - strand, within DZA65_RS19320at 4178.445 kb on - strand, within DZA65_RS19320at 4178.445 kb on - strand, within DZA65_RS19320at 4178.445 kb on - strand, within DZA65_RS19320at 4178.497 kb on + strand, within DZA65_RS19320at 4178.541 kb on + strand, within DZA65_RS19320at 4178.541 kb on + strand, within DZA65_RS19320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
remove
4,176,172 + DZA65_RS19310 0.69 -0.7
4,176,304 + DZA65_RS19310 0.74 -2.3
4,176,409 + DZA65_RS19310 0.77 +0.0
4,176,409 + DZA65_RS19310 0.77 +1.2
4,176,409 + DZA65_RS19310 0.77 -2.7
4,176,409 + DZA65_RS19310 0.77 +0.2
4,176,409 + DZA65_RS19310 0.77 -2.1
4,176,409 + DZA65_RS19310 0.77 -1.3
4,176,409 + DZA65_RS19310 0.77 -0.1
4,176,410 - DZA65_RS19310 0.77 -2.7
4,176,410 - DZA65_RS19310 0.77 -2.8
4,176,410 - DZA65_RS19310 0.77 -1.3
4,176,410 - DZA65_RS19310 0.77 -0.5
4,176,410 - DZA65_RS19310 0.77 -1.6
4,176,410 - DZA65_RS19310 0.77 -1.6
4,176,630 + DZA65_RS19310 0.85 +1.8
4,176,630 + DZA65_RS19310 0.85 -1.4
4,176,630 + DZA65_RS19310 0.85 +1.0
4,176,632 + DZA65_RS19310 0.85 -0.4
4,176,632 + DZA65_RS19310 0.85 -1.4
4,176,632 + DZA65_RS19310 0.85 -1.0
4,176,632 + DZA65_RS19310 0.85 +0.2
4,176,632 + DZA65_RS19310 0.85 -0.6
4,176,632 + DZA65_RS19310 0.85 -1.6
4,176,632 + DZA65_RS19310 0.85 +0.9
4,176,632 + DZA65_RS19310 0.85 -0.4
4,176,632 + DZA65_RS19310 0.85 -1.4
4,176,632 + DZA65_RS19310 0.85 -1.4
4,176,632 + DZA65_RS19310 0.85 -3.1
4,176,632 + DZA65_RS19310 0.85 -1.8
4,176,632 + -1.5
4,176,632 + DZA65_RS19310 0.85 -3.0
4,176,633 - DZA65_RS19310 0.85 -1.1
4,176,633 - DZA65_RS19310 0.85 +0.2
4,176,633 - DZA65_RS19310 0.85 -1.4
4,176,633 - DZA65_RS19310 0.85 +0.6
4,176,633 - DZA65_RS19310 0.85 -1.1
4,176,633 - DZA65_RS19310 0.85 -1.0
4,176,633 - DZA65_RS19310 0.85 -1.4
4,176,633 - DZA65_RS19310 0.85 -1.4
4,176,633 - DZA65_RS19310 0.85 -1.1
4,176,633 - DZA65_RS19310 0.85 -1.1
4,176,633 - DZA65_RS19310 0.85 -1.8
4,176,633 - DZA65_RS19310 0.85 -1.8
4,176,633 - DZA65_RS19310 0.85 -0.6
4,176,633 - DZA65_RS19310 0.85 -0.7
4,176,633 - DZA65_RS19310 0.85 -0.1
4,177,079 + +0.1
4,177,080 - -0.8
4,177,080 - +1.8
4,177,097 + +1.2
4,177,097 + -0.5
4,177,097 + -0.7
4,177,097 + -1.1
4,177,097 + +0.2
4,177,098 - +2.8
4,177,098 - +0.7
4,177,100 + +0.3
4,177,100 + -0.2
4,177,100 + +0.8
4,177,101 - -1.3
4,177,101 - +0.2
4,177,155 + +0.2
4,177,155 + -0.4
4,177,155 + +0.6
4,177,155 + -3.3
4,177,155 + +0.1
4,177,155 + -0.0
4,177,156 - -0.8
4,177,156 - -0.4
4,177,156 - +0.9
4,177,156 - +0.3
4,177,156 - -1.8
4,177,156 - +0.4
4,177,156 - -0.8
4,177,156 - +0.4
4,177,181 - -2.0
4,177,191 + -2.0
4,177,191 + -0.1
4,177,425 + DZA65_RS19315 0.43 +1.0
4,177,471 + DZA65_RS19315 0.50 +0.4
4,177,471 + DZA65_RS19315 0.50 +0.6
4,177,472 - DZA65_RS19315 0.50 -1.3
4,177,472 - DZA65_RS19315 0.50 -1.0
4,177,556 + DZA65_RS19315 0.63 -1.4
4,177,557 - DZA65_RS19315 0.63 +1.2
4,177,557 - DZA65_RS19315 0.63 -2.3
4,177,557 - DZA65_RS19315 0.63 -2.1
4,177,630 + DZA65_RS19315 0.74 +0.7
4,177,681 - DZA65_RS19315 0.82 -0.1
4,177,681 - DZA65_RS19315 0.82 -0.1
4,177,761 - -3.0
4,177,887 + -0.1
4,177,923 + -1.8
4,177,923 + -3.3
4,177,923 + -2.7
4,177,924 - -0.5
4,177,955 - +0.5
4,178,001 + DZA65_RS19320 0.13 -0.4
4,178,002 - DZA65_RS19320 0.13 -0.1
4,178,002 - DZA65_RS19320 0.13 -3.0
4,178,006 + DZA65_RS19320 0.14 +0.6
4,178,112 - DZA65_RS19320 0.24 -1.0
4,178,147 + DZA65_RS19320 0.27 +0.7
4,178,148 - DZA65_RS19320 0.27 -1.0
4,178,222 + DZA65_RS19320 0.34 -0.3
4,178,222 + DZA65_RS19320 0.34 -1.4
4,178,223 - DZA65_RS19320 0.34 +0.8
4,178,223 - DZA65_RS19320 0.34 -2.1
4,178,223 - DZA65_RS19320 0.34 -0.8
4,178,223 - DZA65_RS19320 0.34 -0.4
4,178,223 - DZA65_RS19320 0.34 +1.4
4,178,223 - DZA65_RS19320 0.34 -0.2
4,178,318 + DZA65_RS19320 0.43 -0.8
4,178,318 + DZA65_RS19320 0.43 -0.6
4,178,318 + DZA65_RS19320 0.43 +2.5
4,178,318 + DZA65_RS19320 0.43 +0.2
4,178,319 - DZA65_RS19320 0.43 -0.8
4,178,319 - DZA65_RS19320 0.43 +1.1
4,178,319 - DZA65_RS19320 0.43 +0.2
4,178,386 - DZA65_RS19320 0.50 -0.4
4,178,444 + DZA65_RS19320 0.55 -1.5
4,178,444 + DZA65_RS19320 0.55 +0.2
4,178,444 + DZA65_RS19320 0.55 +1.2
4,178,444 + DZA65_RS19320 0.55 -0.8
4,178,444 + DZA65_RS19320 0.55 -2.0
4,178,444 + DZA65_RS19320 0.55 +2.2
4,178,444 + DZA65_RS19320 0.55 -0.1
4,178,445 - DZA65_RS19320 0.55 -0.1
4,178,445 - DZA65_RS19320 0.55 -2.9
4,178,445 - DZA65_RS19320 0.55 -1.6
4,178,445 - DZA65_RS19320 0.55 -0.8
4,178,497 + DZA65_RS19320 0.60 -1.6
4,178,541 + DZA65_RS19320 0.65 -0.4
4,178,541 + DZA65_RS19320 0.65 -2.0

Or see this region's nucleotide sequence