Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18710

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,028,645	-		DZA65_RS18705	0.30	-1.4
4,028,661	+		DZA65_RS18705	0.31	+0.0
4,028,661	+		DZA65_RS18705	0.31	-1.1
4,028,661	+		DZA65_RS18705	0.31	-0.8
4,028,661	+		DZA65_RS18705	0.31	-1.6
4,028,662	-		DZA65_RS18705	0.32	-0.8
4,028,662	-		DZA65_RS18705	0.32	+1.5
4,028,763	+		DZA65_RS18705	0.39	+0.5
4,028,763	+		DZA65_RS18705	0.39	+0.6
4,028,763	+		DZA65_RS18705	0.39	+0.4
4,028,763	+		DZA65_RS18705	0.39	-1.0
4,028,763	+		DZA65_RS18705	0.39	-0.2
4,028,763	+		DZA65_RS18705	0.39	-1.6
4,028,764	-		DZA65_RS18705	0.39	+1.0
4,028,764	-		DZA65_RS18705	0.39	-1.4
4,028,764	-		DZA65_RS18705	0.39	+0.6
4,028,764	-		DZA65_RS18705	0.39	-0.4
4,028,764	-		DZA65_RS18705	0.39	-3.1
4,028,764	-		DZA65_RS18705	0.39	+0.3
4,028,800	+		DZA65_RS18705	0.42	-0.6
4,028,801	-		DZA65_RS18705	0.42	+0.7
4,028,824	+		DZA65_RS18705	0.44	-1.2
4,028,840	-		DZA65_RS18705	0.45	-0.8
4,028,840	-		DZA65_RS18705	0.45	+1.2
4,028,840	-		DZA65_RS18705	0.45	+0.2
4,028,840	-		DZA65_RS18705	0.45	+0.6
4,028,847	+		DZA65_RS18705	0.45	-0.3
4,028,934	-		DZA65_RS18705	0.52	-1.1
4,028,934	-		DZA65_RS18705	0.52	-1.6
4,028,970	+		DZA65_RS18705	0.55	-3.0
4,028,970	+		DZA65_RS18705	0.55	+0.0
4,028,970	+		DZA65_RS18705	0.55	-0.8
4,028,970	+		DZA65_RS18705	0.55	-0.4
4,028,971	-		DZA65_RS18705	0.55	-1.1
4,028,971	-		DZA65_RS18705	0.55	+0.2
4,028,981	+		DZA65_RS18705	0.55	+0.2
4,028,981	+		DZA65_RS18705	0.55	-1.4
4,028,982	-		DZA65_RS18705	0.55	+0.2
4,028,982	-		DZA65_RS18705	0.55	+0.2
4,028,991	+		DZA65_RS18705	0.56	+0.7
4,028,991	+		DZA65_RS18705	0.56	-0.3
4,028,991	+		DZA65_RS18705	0.56	-1.4
4,028,992	-		DZA65_RS18705	0.56	+2.2
4,028,992	-		DZA65_RS18705	0.56	+0.2
4,028,992	-		DZA65_RS18705	0.56	-1.2
4,028,992	-		DZA65_RS18705	0.56	-0.0
4,028,992	-		DZA65_RS18705	0.56	-0.8
4,029,015	+		DZA65_RS18705	0.58	+0.5
4,029,015	+		DZA65_RS18705	0.58	-1.6
4,029,015	+		DZA65_RS18705	0.58	+0.6
4,029,015	+		DZA65_RS18705	0.58	-2.1
4,029,015	+		DZA65_RS18705	0.58	-1.4
4,029,015	+		DZA65_RS18705	0.58	+1.2
4,029,015	+		DZA65_RS18705	0.58	-0.4
4,029,016	-		DZA65_RS18705	0.58	+0.6
4,029,016	-		DZA65_RS18705	0.58	-1.4
4,029,016	-		DZA65_RS18705	0.58	-1.1
4,029,025	+		DZA65_RS18705	0.59	-1.0
4,029,026	-		DZA65_RS18705	0.59	-1.8
4,029,146	+		DZA65_RS18705	0.68	-1.6
4,029,146	+		DZA65_RS18705	0.68	-2.1
4,029,147	-		DZA65_RS18705	0.68	+0.3
4,029,230	+		DZA65_RS18705	0.74	+1.2
4,029,231	-		DZA65_RS18705	0.74	-0.1
4,029,231	-		DZA65_RS18705	0.74	-0.1
4,029,352	+		DZA65_RS18705	0.83	-1.4
4,029,402	+		DZA65_RS18705	0.87	+0.3
4,029,402	+		DZA65_RS18705	0.87	-2.1
4,029,402	+		DZA65_RS18705	0.87	-0.3
4,029,402	+		DZA65_RS18705	0.87	-0.7
4,029,403	-		DZA65_RS18705	0.87	-2.0
4,029,413	+		DZA65_RS18705	0.88	+2.4
4,029,413	+		DZA65_RS18705	0.88	+1.9
4,029,413	+		DZA65_RS18705	0.88	+2.2
4,029,413	+		DZA65_RS18705	0.88	+0.7
4,029,413	+		DZA65_RS18705	0.88	+0.8
4,029,413	+		DZA65_RS18705	0.88	-0.4
4,029,414	-		DZA65_RS18705	0.88	-2.4
4,029,414	-		DZA65_RS18705	0.88	-0.3
4,029,414	-		DZA65_RS18705	0.88	-2.0
4,029,414	-		DZA65_RS18705	0.88	-0.4
4,029,488	-				-0.8
4,029,499	+				-0.8
4,029,538	+				-2.3
4,029,540	+				+1.3
4,029,540	+				+0.2
4,029,540	+				+0.4
4,029,540	+				-3.4
4,029,541	-				-0.6
4,029,541	-				-2.4
4,029,541	-				-1.8
4,029,541	-				+0.2
4,029,541	-				+0.5
4,029,541	-				-0.4
4,029,541	-				+1.8
4,029,541	-				-1.3
4,029,541	-				+0.0
4,029,560	+				-0.1
4,029,561	-				-1.6
4,029,561	-				-1.1
4,029,617	-				-2.0
4,029,617	-				+0.2
4,029,645	+				+0.2
4,029,728	+				+0.4
4,029,729	-				-2.5
4,029,740	+				-0.9
4,029,740	+				+1.3
4,029,740	+				+0.9
4,029,740	+				-1.1
4,029,740	+				-1.0
4,029,741	-				-1.1
4,029,798	+				-2.1
4,029,843	+				-1.8
4,029,843	+				+0.5
4,029,843	+				+0.3
4,029,843	+				+1.2
4,029,843	+				-1.1
4,029,843	+				-2.0
4,029,844	-				-1.1
4,029,844	-				-0.6
4,029,844	-				+0.5
4,030,080	+		DZA65_RS18710	0.15	-0.1
4,030,106	+		DZA65_RS18710	0.16	-1.1
4,030,228	+		DZA65_RS18710	0.19	-0.8
4,030,228	+		DZA65_RS18710	0.19	-0.6
4,030,228	+		DZA65_RS18710	0.19	+0.4
4,030,229	-		DZA65_RS18710	0.19	+2.8
4,030,235	+		DZA65_RS18710	0.20	+0.2
4,030,236	-		DZA65_RS18710	0.20	-0.9
4,030,236	-		DZA65_RS18710	0.20	+0.6
4,030,243	-				-0.4
4,030,243	-		DZA65_RS18710	0.20	-1.0
4,030,243	-		DZA65_RS18710	0.20	+0.9
4,030,243	-		DZA65_RS18710	0.20	-1.6
4,030,243	-		DZA65_RS18710	0.20	-0.7
4,030,346	+		DZA65_RS18710	0.23	+0.0
4,030,346	+		DZA65_RS18710	0.23	-0.8
4,030,346	+		DZA65_RS18710	0.23	+0.2
4,030,346	+		DZA65_RS18710	0.23	+1.8
4,030,347	-		DZA65_RS18710	0.23	-0.2
4,030,347	-		DZA65_RS18710	0.23	+1.4
4,030,470	+		DZA65_RS18710	0.27	+2.2
4,030,470	+		DZA65_RS18710	0.27	+0.7
4,030,470	+		DZA65_RS18710	0.27	+0.2
4,030,471	-		DZA65_RS18710	0.27	-0.3
4,030,471	-		DZA65_RS18710	0.27	-2.3
4,030,538	+		DZA65_RS18710	0.29	-0.4
4,030,539	-		DZA65_RS18710	0.29	-0.7
4,030,547	+		DZA65_RS18710	0.29	+0.6
4,030,547	+		DZA65_RS18710	0.29	-0.1
4,030,548	-		DZA65_RS18710	0.29	-2.1
4,030,548	-				-1.1
4,030,548	-		DZA65_RS18710	0.29	+0.6
4,030,559	+		DZA65_RS18710	0.29	+0.1
4,030,917	+		DZA65_RS18710	0.40	+0.6
4,030,918	-		DZA65_RS18710	0.40	+1.2
4,030,918	-		DZA65_RS18710	0.40	+0.7
4,030,944	-		DZA65_RS18710	0.41	-2.0
4,030,976	+		DZA65_RS18710	0.42	-0.5
4,030,976	+		DZA65_RS18710	0.42	-0.6
4,030,977	-		DZA65_RS18710	0.42	-0.7
4,031,137	+		DZA65_RS18710	0.47	-1.4
4,031,300	+		DZA65_RS18710	0.52	-0.7
4,031,300	+		DZA65_RS18710	0.52	-0.8
4,031,309	+		DZA65_RS18710	0.52	-1.4
4,031,309	+		DZA65_RS18710	0.52	-0.4
4,031,309	+		DZA65_RS18710	0.52	-0.6
4,031,310	-		DZA65_RS18710	0.52	+0.5
4,031,310	-		DZA65_RS18710	0.52	-2.8
4,031,310	-		DZA65_RS18710	0.52	-2.1
4,031,310	-		DZA65_RS18710	0.52	-0.5
4,031,310	-		DZA65_RS18710	0.52	+0.4
4,031,310	-		DZA65_RS18710	0.52	-0.4
4,031,323	-		DZA65_RS18710	0.53	-0.8
4,031,543	+		DZA65_RS18710	0.59	+0.2
4,031,543	+		DZA65_RS18710	0.59	+0.1
4,031,543	+		DZA65_RS18710	0.59	-0.6
4,031,543	+		DZA65_RS18710	0.59	-0.0
4,031,544	-		DZA65_RS18710	0.60	-0.8
4,031,544	-		DZA65_RS18710	0.60	-3.6
4,031,547	+		DZA65_RS18710	0.60	-1.1
4,031,547	+		DZA65_RS18710	0.60	-0.1
4,031,547	+		DZA65_RS18710	0.60	+0.5
4,031,547	+		DZA65_RS18710	0.60	+1.9
4,031,547	+		DZA65_RS18710	0.60	-0.3
4,031,547	+		DZA65_RS18710	0.60	-1.9
4,031,547	+		DZA65_RS18710	0.60	+0.9
4,031,548	-		DZA65_RS18710	0.60	+0.8
4,031,548	-		DZA65_RS18710	0.60	-1.6
4,031,548	-		DZA65_RS18710	0.60	+0.4
4,031,548	-		DZA65_RS18710	0.60	+0.2
4,031,548	-		DZA65_RS18710	0.60	-0.4
4,031,548	-		DZA65_RS18710	0.60	-1.1
4,031,548	-		DZA65_RS18710	0.60	+0.6
4,031,548	-		DZA65_RS18710	0.60	-0.8
4,031,548	-		DZA65_RS18710	0.60	+1.2
4,031,548	-				-0.4
4,031,548	-		DZA65_RS18710	0.60	+0.2
4,031,830	-		DZA65_RS18710	0.68	-3.1
4,031,836	-		DZA65_RS18710	0.68	+1.0
4,031,850	+		DZA65_RS18710	0.69	+0.2
4,031,851	-		DZA65_RS18710	0.69	-0.5
4,031,852	+		DZA65_RS18710	0.69	-0.4
4,031,853	-		DZA65_RS18710	0.69	+0.0
4,031,894	+		DZA65_RS18710	0.70	+0.2
4,031,895	-		DZA65_RS18710	0.70	-2.3
4,031,895	-		DZA65_RS18710	0.70	+0.4
4,031,895	-		DZA65_RS18710	0.70	+0.1
4,031,895	-		DZA65_RS18710	0.70	-1.6
4,032,273	+		DZA65_RS18710	0.82	-0.4
4,032,273	+		DZA65_RS18710	0.82	-1.5
4,032,274	-		DZA65_RS18710	0.82	+0.2
4,032,292	+		DZA65_RS18710	0.82	+0.4
4,032,293	-		DZA65_RS18710	0.82	-1.4
4,032,434	+				+1.8
4,032,434	+		DZA65_RS18710	0.87	-1.4
4,032,549	+				-1.8
4,032,549	+				+0.2
4,032,582	+				-1.1
4,032,640	-				+0.8
4,033,025	+		DZA65_RS18715	0.16	+0.0
4,033,055	+		DZA65_RS18715	0.19	-0.8
4,033,056	-				-1.4
4,033,056	-		DZA65_RS18715	0.19	-1.6
4,033,174	+		DZA65_RS18715	0.31	-0.6
4,033,174	+		DZA65_RS18715	0.31	+0.4
4,033,174	+		DZA65_RS18715	0.31	+0.3
4,033,174	+		DZA65_RS18715	0.31	-0.4
4,033,175	-		DZA65_RS18715	0.31	+0.6
4,033,175	-		DZA65_RS18715	0.31	-2.3
4,033,175	-		DZA65_RS18715	0.31	+0.2
4,033,247	-		DZA65_RS18715	0.38	-1.3
4,033,247	-		DZA65_RS18715	0.38	+0.7
4,033,274	-		DZA65_RS18715	0.41	-0.0
4,033,522	+		DZA65_RS18715	0.65	-2.0
4,033,522	+		DZA65_RS18715	0.65	-0.4
4,033,537	+		DZA65_RS18715	0.67	+0.2
4,033,703	+		DZA65_RS18715	0.83	-1.4
4,033,703	+		DZA65_RS18715	0.83	-0.6
4,033,726	+		DZA65_RS18715	0.86	+0.2
4,033,726	+		DZA65_RS18715	0.86	-1.6
4,033,727	-		DZA65_RS18715	0.86	-0.8
4,033,727	-		DZA65_RS18715	0.86	-1.8
4,033,727	-		DZA65_RS18715	0.86	-1.6
4,033,756	+		DZA65_RS18715	0.89	-2.1
4,033,756	+		DZA65_RS18715	0.89	-1.4
4,033,756	+		DZA65_RS18715	0.89	+0.8
4,033,756	+		DZA65_RS18715	0.89	+0.3
4,033,756	+		DZA65_RS18715	0.89	+0.6
4,033,756	+		DZA65_RS18715	0.89	-0.4
4,033,756	+		DZA65_RS18715	0.89	+2.6
4,033,756	+		DZA65_RS18715	0.89	-0.8
4,033,756	+		DZA65_RS18715	0.89	+1.2
4,033,756	+		DZA65_RS18715	0.89	-0.4
4,033,756	+		DZA65_RS18715	0.89	-1.4
4,033,757	-		DZA65_RS18715	0.89	-2.0
4,033,757	-		DZA65_RS18715	0.89	+0.6
4,033,757	-		DZA65_RS18715	0.89	-1.6
4,033,757	-		DZA65_RS18715	0.89	+0.8
4,033,784	+				+1.0
4,033,785	-				-1.4
4,033,801	+				-1.5
4,033,801	+				+1.9
4,033,802	-				+1.4
4,033,802	-				+0.6
4,033,804	+				+0.7
4,033,804	+				-0.3
4,033,804	+				-0.4
4,033,804	+				-0.5
4,033,804	+				-0.1
4,033,805	-				-0.4
4,033,805	-				-1.1
4,033,805	-				-0.3
4,033,805	-				-1.8
4,033,808	+				-0.0
4,033,809	-				+0.2
4,033,832	+				+1.6
4,033,832	+				-0.1
4,033,840	-				-2.3
4,033,854	-				+1.1
4,033,857	+				+0.6
4,033,857	+				-0.6
4,033,857	+				-1.1
4,033,857	+				-0.8
4,033,857	+				+2.4
4,033,857	+				-1.4
4,033,857	+				+0.3
4,033,857	+				-0.4
4,033,858	-				-0.8
4,033,858	-				+1.0
4,033,858	-				+0.2
4,033,858	-				+0.4
4,033,858	-				-1.6
4,033,858	-				+0.2
4,033,858	-				-1.0
4,033,858	-				-0.8
4,033,858	-				+0.8
4,033,858	-				-2.0
4,033,858	-				-0.4
4,033,858	-				-0.6
4,033,861	+				-1.8
4,033,868	+				-0.2
4,033,868	+				-2.5