Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16930

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,656,139	+		DZA65_RS16920	0.71	-1.8
3,656,140	-		DZA65_RS16920	0.72	-2.3
3,656,140	-		DZA65_RS16920	0.72	-2.8
3,656,140	-		DZA65_RS16920	0.72	-2.6
3,656,140	-		DZA65_RS16920	0.72	+0.0
3,656,227	+		DZA65_RS16920	0.81	+0.5
3,656,227	+		DZA65_RS16920	0.81	+0.2
3,656,228	-		DZA65_RS16920	0.81	+0.0
3,656,228	-		DZA65_RS16920	0.81	+0.4
3,656,240	+		DZA65_RS16920	0.82	-1.0
3,656,241	-		DZA65_RS16920	0.82	-0.3
3,656,241	-		DZA65_RS16920	0.82	-1.0
3,656,241	-		DZA65_RS16920	0.82	-1.6
3,656,274	+		DZA65_RS16920	0.86	+0.4
3,656,274	+		DZA65_RS16920	0.86	-1.6
3,656,274	+		DZA65_RS16920	0.86	-1.8
3,656,275	-		DZA65_RS16920	0.86	-0.5
3,656,275	-		DZA65_RS16920	0.86	-1.6
3,656,275	-		DZA65_RS16920	0.86	+0.3
3,656,275	-		DZA65_RS16920	0.86	-2.3
3,656,275	-		DZA65_RS16920	0.86	-0.4
3,656,275	-		DZA65_RS16920	0.86	+0.3
3,656,275	-				+1.2
3,656,277	+		DZA65_RS16920	0.86	+0.2
3,656,278	-		DZA65_RS16920	0.86	+0.8
3,656,287	-		DZA65_RS16920	0.87	-0.8
3,656,361	+				+0.0
3,656,361	+				-1.0
3,656,361	+				-0.2
3,656,361	+				-1.8
3,656,361	+				+0.7
3,656,361	+				+0.2
3,656,362	-				-3.1
3,656,362	-				+0.0
3,656,362	-				+0.8
3,656,381	+				+0.3
3,656,381	+				-1.6
3,656,381	+				-2.1
3,656,381	+				-1.6
3,656,382	-				-0.7
3,656,382	-				-0.3
3,656,383	+				-1.8
3,656,383	+				+0.2
3,656,383	+				+1.0
3,656,383	+				+1.4
3,656,383	+				-1.4
3,656,383	+				-0.5
3,656,383	+				+0.0
3,656,383	+				-0.5
3,656,383	+				-0.4
3,656,383	+				-0.2
3,656,383	+				-2.3
3,656,383	+				-2.3
3,656,383	+				-0.4
3,656,383	+				-1.1
3,656,383	+				-1.3
3,656,383	+				-0.1
3,656,383	+				+1.4
3,656,383	+				-0.2
3,656,383	+				-0.8
3,656,384	-				-0.8
3,656,384	-				+0.0
3,656,384	-				-1.7
3,656,384	-				+0.8
3,656,384	-				+0.6
3,656,384	-				-1.1
3,656,384	-				-2.4
3,656,384	-				-1.7
3,656,384	-				-0.8
3,656,384	-				-2.7
3,656,411	+				-2.6
3,656,412	-				+0.2
3,656,452	+				+0.0
3,656,525	+		DZA65_RS16925	0.17	-0.9
3,656,525	+		DZA65_RS16925	0.17	+0.8
3,656,526	-		DZA65_RS16925	0.17	-2.7
3,656,824	-		DZA65_RS16925	0.62	-1.0
3,657,087	-				-1.3
3,657,087	-				+0.0
3,657,087	-				-1.8
3,657,110	-				+0.0
3,657,127	-				-1.0
3,657,136	+				-2.4
3,657,136	+				+0.4
3,657,136	+				+0.6
3,657,151	+				-1.8
3,657,151	+				-2.1
3,657,151	+				-1.3
3,657,152	-				-1.6
3,657,152	-				-2.9
3,657,234	+		DZA65_RS16930	0.19	-1.2
3,657,235	-		DZA65_RS16930	0.19	-2.8
3,657,235	-		DZA65_RS16930	0.19	+1.4
3,657,235	-		DZA65_RS16930	0.19	-0.8
3,657,235	-		DZA65_RS16930	0.19	-1.8
3,657,235	-		DZA65_RS16930	0.19	-1.6
3,657,235	-		DZA65_RS16930	0.19	-1.5
3,657,235	-		DZA65_RS16930	0.19	-1.0
3,657,262	+		DZA65_RS16930	0.24	+0.0
3,657,262	+		DZA65_RS16930	0.24	-3.0
3,657,263	-		DZA65_RS16930	0.24	+0.4
3,657,299	-		DZA65_RS16930	0.30	-0.1
3,657,299	-		DZA65_RS16930	0.30	-1.0
3,657,299	-		DZA65_RS16930	0.30	+0.7
3,657,301	+		DZA65_RS16930	0.31	+0.4
3,657,301	+				+2.9
3,657,302	-		DZA65_RS16930	0.31	-1.0
3,657,302	-		DZA65_RS16930	0.31	-2.0
3,657,338	+		DZA65_RS16930	0.37	+0.0
3,657,338	+		DZA65_RS16930	0.37	-1.4
3,657,338	+		DZA65_RS16930	0.37	-2.8
3,657,338	+		DZA65_RS16930	0.37	-2.7
3,657,338	+		DZA65_RS16930	0.37	+0.2
3,657,338	+		DZA65_RS16930	0.37	+0.0
3,657,338	+		DZA65_RS16930	0.37	-1.0
3,657,338	+		DZA65_RS16930	0.37	+1.4
3,657,338	+		DZA65_RS16930	0.37	+1.4
3,657,339	-		DZA65_RS16930	0.37	-1.2
3,657,339	-		DZA65_RS16930	0.37	-0.3
3,657,339	-		DZA65_RS16930	0.37	-1.0
3,657,339	-		DZA65_RS16930	0.37	-1.2
3,657,339	-		DZA65_RS16930	0.37	+0.4
3,657,339	-		DZA65_RS16930	0.37	-1.4
3,657,339	-		DZA65_RS16930	0.37	-0.0
3,657,339	-		DZA65_RS16930	0.37	-1.3
3,657,339	-		DZA65_RS16930	0.37	-2.2
3,657,339	-		DZA65_RS16930	0.37	+0.0
3,657,356	+		DZA65_RS16930	0.40	-0.3
3,657,356	+		DZA65_RS16930	0.40	-1.8
3,657,356	+		DZA65_RS16930	0.40	-1.0
3,657,357	-		DZA65_RS16930	0.40	-1.8
3,657,357	-		DZA65_RS16930	0.40	+0.0
3,657,384	+		DZA65_RS16930	0.45	-1.0
3,657,407	+		DZA65_RS16930	0.49	+0.4
3,657,408	-		DZA65_RS16930	0.49	-0.2
3,657,447	+		DZA65_RS16930	0.56	-1.6
3,657,447	+		DZA65_RS16930	0.56	-2.4
3,657,447	+		DZA65_RS16930	0.56	-2.0
3,657,448	-		DZA65_RS16930	0.56	-2.1
3,657,448	-		DZA65_RS16930	0.56	-1.7
3,657,472	+		DZA65_RS16930	0.60	+0.0
3,657,489	+		DZA65_RS16930	0.63	+0.4
3,657,489	+		DZA65_RS16930	0.63	-0.6
3,657,489	+		DZA65_RS16930	0.63	-2.2
3,657,489	+		DZA65_RS16930	0.63	-1.3
3,657,490	-		DZA65_RS16930	0.63	+0.8
3,657,490	-		DZA65_RS16930	0.63	-2.1
3,657,490	-		DZA65_RS16930	0.63	-0.6
3,657,490	-		DZA65_RS16930	0.63	-1.7
3,657,529	-		DZA65_RS16930	0.70	+0.0
3,657,529	-		DZA65_RS16930	0.70	-3.1
3,657,539	-		DZA65_RS16930	0.72	-0.6
3,657,539	-		DZA65_RS16930	0.72	-0.9
3,657,539	-		DZA65_RS16930	0.72	+0.4
3,657,583	-		DZA65_RS16930	0.80	+1.5
3,657,583	-		DZA65_RS16930	0.80	+0.2
3,657,607	+		DZA65_RS16930	0.84	-0.2
3,657,607	+		DZA65_RS16930	0.84	+0.3
3,657,607	+		DZA65_RS16930	0.84	-0.1
3,657,608	-		DZA65_RS16930	0.84	-0.6
3,657,608	-		DZA65_RS16930	0.84	+0.8
3,657,608	-		DZA65_RS16930	0.84	-0.4
3,657,634	+		DZA65_RS16930	0.88	+3.0
3,657,635	-		DZA65_RS16930	0.89	+0.4
3,657,635	-		DZA65_RS16930	0.89	+0.0
3,657,635	-		DZA65_RS16930	0.89	+3.3
3,657,635	-		DZA65_RS16930	0.89	-1.7
3,657,635	-		DZA65_RS16930	0.89	+0.6
3,657,686	+				-0.5
3,657,707	+				-0.9
3,657,707	+				-1.0
3,657,707	+				-0.6
3,657,707	+				-1.6
3,657,707	+				-1.1
3,657,707	+				+0.0
3,657,707	+				-1.8
3,657,707	+				-1.3
3,657,707	+				-1.4
3,657,708	-				-0.8
3,657,708	-				+0.8
3,657,708	-				-1.8
3,657,708	-				-0.1
3,657,708	-				-2.0
3,657,738	+				-0.4
3,657,738	+				+0.2
3,657,738	+				-1.3
3,657,738	+				-2.9
3,657,739	-				-0.4
3,657,739	-				+1.4
3,657,748	-				+0.3
3,657,748	-				-3.4
3,657,748	-				+0.5
3,657,748	-				-2.0
3,657,759	+				-1.2
3,657,759	+				-1.5
3,657,759	+				-0.3
3,657,759	+				-1.6
3,657,759	+				-1.0
3,657,759	+				-0.4
3,657,759	+				-1.0
3,657,759	+				+0.2
3,657,759	+				+0.6
3,657,759	+				+1.8
3,657,759	+				-1.3
3,657,759	+				+1.1
3,657,760	-				-1.5
3,657,760	-				+1.0
3,657,760	-				-1.3
3,657,760	-				-2.9
3,657,760	-				+0.2
3,657,760	-				+0.0
3,657,760	-				+0.4
3,657,760	-				-1.1
3,657,760	-				+0.9
3,657,761	+				-1.0
3,657,761	+				+3.5
3,657,761	+				-0.5
3,657,761	+				-0.6
3,657,761	+				+0.4
3,657,761	+				-1.0
3,657,761	+				-1.8
3,657,761	+				-0.0
3,657,762	-				+0.3
3,657,762	-				+1.0
3,657,762	-				-1.8
3,657,762	-				-0.4
3,657,762	-				-0.6
3,657,762	-				+1.0
3,657,762	-				-0.8
3,657,762	-				+0.7
3,657,762	-				-0.6
3,657,762	-				-1.0
3,657,762	-				-0.6
3,657,762	-				-2.0
3,657,779	+				+0.4
3,657,788	-				+0.0
3,657,788	-				-0.2
3,657,792	+				-0.1
3,657,798	+				+0.4
3,657,805	+				-1.3
3,657,806	-				-0.3
3,657,806	-				-1.4
3,657,872	+				-0.3
3,657,872	+				+0.4
3,657,872	+				-0.5
3,657,873	-				-1.0
3,657,873	-				+0.2
3,657,873	-				-1.1
3,657,873	-				+0.7
3,657,890	+				-1.6
3,657,908	-				-0.6
3,657,908	-				-0.7
3,657,939	+				-0.8
3,657,939	+				+0.6
3,657,939	+				+1.2
3,657,939	+				+0.6
3,657,969	+				-0.7
3,657,989	+				-1.3
3,657,995	-				+1.8
3,658,047	+				-0.8
3,658,047	+				-0.3
3,658,047	+				-1.6
3,658,047	+				+0.3
3,658,047	+				+0.2
3,658,047	+				-1.3
3,658,047	+				-1.1
3,658,048	-				-2.4
3,658,048	-				+1.6
3,658,066	+				-1.3
3,658,066	+				+0.0
3,658,066	+				+0.6
3,658,067	-				-2.3
3,658,067	-				-1.0
3,658,079	+				-0.3
3,658,079	+				+2.0
3,658,079	+				+1.0
3,658,079	+				-2.7
3,658,079	+				+0.2
3,658,080	-				-0.8
3,658,080	-				-0.3
3,658,182	+				-1.4
3,658,189	+				+1.7
3,658,189	+				+0.0
3,658,189	+				-0.8
3,658,189	+				-1.9
3,658,190	-				-2.0
3,658,302	+		DZA65_RS16935	0.16	-1.9
3,658,311	+		DZA65_RS16935	0.16	+0.4
3,658,431	+		DZA65_RS16935	0.24	-2.6
3,658,432	-		DZA65_RS16935	0.24	-1.6
3,658,432	-		DZA65_RS16935	0.24	-0.8
3,658,490	+		DZA65_RS16935	0.28	+1.6
3,658,490	+		DZA65_RS16935	0.28	-1.0
3,658,490	+		DZA65_RS16935	0.28	-1.0
3,658,491	-		DZA65_RS16935	0.28	-2.3
3,658,491	-		DZA65_RS16935	0.28	-0.5
3,658,491	-				-2.8
3,658,491	-		DZA65_RS16935	0.28	-0.2
3,658,586	+		DZA65_RS16935	0.34	-0.3
3,658,594	+		DZA65_RS16935	0.34	-0.7
3,658,594	+		DZA65_RS16935	0.34	-0.6
3,658,595	-		DZA65_RS16935	0.34	-3.1
3,658,678	+		DZA65_RS16935	0.39	-0.4
3,658,679	-		DZA65_RS16935	0.39	+1.8
3,658,679	-		DZA65_RS16935	0.39	+1.8
3,658,679	-		DZA65_RS16935	0.39	-0.8
3,658,684	+		DZA65_RS16935	0.40	+0.2
3,658,684	+		DZA65_RS16935	0.40	-1.6
3,658,684	+		DZA65_RS16935	0.40	+1.0
3,658,684	+		DZA65_RS16935	0.40	-1.0
3,658,685	-		DZA65_RS16935	0.40	+2.4
3,658,685	-		DZA65_RS16935	0.40	+0.0
3,658,685	-		DZA65_RS16935	0.40	-0.4