Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12130

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,590,440	-		DZA65_RS12125	0.55	-1.0
2,590,485	+				-2.2
2,590,485	+		DZA65_RS12125	0.57	-0.2
2,590,485	+		DZA65_RS12125	0.57	+0.2
2,590,485	+		DZA65_RS12125	0.57	+0.1
2,590,485	+		DZA65_RS12125	0.57	-2.3
2,590,485	+		DZA65_RS12125	0.57	+0.1
2,590,485	+		DZA65_RS12125	0.57	-1.1
2,590,486	-		DZA65_RS12125	0.57	-1.2
2,590,486	-		DZA65_RS12125	0.57	-0.2
2,590,486	-		DZA65_RS12125	0.57	-1.8
2,590,486	-		DZA65_RS12125	0.57	-2.0
2,590,486	-		DZA65_RS12125	0.57	-0.8
2,590,486	-		DZA65_RS12125	0.57	+0.4
2,590,486	-		DZA65_RS12125	0.57	-1.5
2,590,486	-		DZA65_RS12125	0.57	-2.3
2,590,486	-		DZA65_RS12125	0.57	-2.9
2,590,486	-		DZA65_RS12125	0.57	-0.8
2,590,486	-		DZA65_RS12125	0.57	+0.6
2,590,486	-		DZA65_RS12125	0.57	-2.3
2,590,486	-		DZA65_RS12125	0.57	-1.2
2,590,486	-		DZA65_RS12125	0.57	-0.9
2,590,489	+		DZA65_RS12125	0.58	-0.2
2,590,489	+		DZA65_RS12125	0.58	-1.0
2,590,489	+		DZA65_RS12125	0.58	-1.2
2,590,489	+		DZA65_RS12125	0.58	-2.5
2,590,489	+		DZA65_RS12125	0.58	-1.6
2,590,489	+		DZA65_RS12125	0.58	-0.3
2,590,489	+		DZA65_RS12125	0.58	+0.5
2,590,489	+		DZA65_RS12125	0.58	-0.4
2,590,489	+		DZA65_RS12125	0.58	+1.1
2,590,489	+		DZA65_RS12125	0.58	-2.5
2,590,489	+		DZA65_RS12125	0.58	-0.2
2,590,489	+		DZA65_RS12125	0.58	-0.8
2,590,490	-		DZA65_RS12125	0.58	+1.6
2,590,490	-		DZA65_RS12125	0.58	+0.2
2,590,490	-		DZA65_RS12125	0.58	-0.3
2,590,490	-		DZA65_RS12125	0.58	-1.8
2,590,490	-		DZA65_RS12125	0.58	-0.6
2,590,490	-		DZA65_RS12125	0.58	-0.3
2,590,490	-		DZA65_RS12125	0.58	-2.0
2,590,779	+		DZA65_RS12125	0.71	-2.1
2,590,803	-		DZA65_RS12125	0.73	+1.2
2,590,883	+				+0.1
2,590,884	-		DZA65_RS12125	0.77	+1.0
2,591,063	+		DZA65_RS12125	0.85	+0.2
2,591,063	+		DZA65_RS12125	0.85	-0.2
2,591,064	-		DZA65_RS12125	0.85	-0.3
2,591,064	-		DZA65_RS12125	0.85	-0.4
2,591,209	+				-0.2
2,591,240	+				-0.4
2,591,241	-				-0.5
2,591,241	-				-0.5
2,591,247	-				+2.8
2,591,247	-				-0.8
2,591,344	+				+0.2
2,591,345	-				-0.8
2,591,345	-				-2.0
2,591,345	-				+0.3
2,591,354	+				-1.8
2,591,354	+				-0.4
2,591,354	+				-0.2
2,591,354	+				+1.1
2,591,354	+				+1.3
2,591,355	-				-2.8
2,591,355	-				+1.2
2,591,355	-				-1.5
2,591,355	-				-2.2
2,591,355	-				+1.8
2,591,355	-				+1.3
2,591,535	-		DZA65_RS12130	0.40	+0.1
2,591,540	+		DZA65_RS12130	0.41	-1.6
2,591,540	+		DZA65_RS12130	0.41	-2.3
2,591,540	+		DZA65_RS12130	0.41	-0.8
2,591,541	-		DZA65_RS12130	0.41	-1.2
2,591,541	-		DZA65_RS12130	0.41	-1.2
2,591,541	-		DZA65_RS12130	0.41	+0.4
2,591,614	-		DZA65_RS12130	0.58	-1.2
2,591,626	+		DZA65_RS12130	0.60	-2.0
2,591,626	+		DZA65_RS12130	0.60	+0.8
2,591,626	+		DZA65_RS12130	0.60	-1.5
2,591,626	+		DZA65_RS12130	0.60	-0.6
2,591,627	-		DZA65_RS12130	0.61	-2.0
2,591,866	+		DZA65_RS12135	0.36	+0.8
2,591,867	-		DZA65_RS12135	0.36	+1.0
2,591,885	-		DZA65_RS12135	0.44	-1.5
2,591,893	+		DZA65_RS12135	0.48	-0.8
2,591,893	+		DZA65_RS12135	0.48	-0.6
2,591,893	+		DZA65_RS12135	0.48	-2.0
2,591,893	+		DZA65_RS12135	0.48	-1.6
2,591,893	+		DZA65_RS12135	0.48	-0.8
2,591,893	+		DZA65_RS12135	0.48	-0.6
2,591,893	+		DZA65_RS12135	0.48	-2.3
2,591,893	+		DZA65_RS12135	0.48	-2.5
2,591,893	+		DZA65_RS12135	0.48	-0.2
2,591,894	-		DZA65_RS12135	0.48	-1.5
2,591,894	-		DZA65_RS12135	0.48	-2.4
2,591,894	-		DZA65_RS12135	0.48	-1.3
2,591,894	-		DZA65_RS12135	0.48	-0.9
2,591,894	-		DZA65_RS12135	0.48	+0.2
2,591,894	-		DZA65_RS12135	0.48	-0.2
2,591,894	-		DZA65_RS12135	0.48	+2.6
2,591,894	-		DZA65_RS12135	0.48	+2.1
2,591,897	+		DZA65_RS12135	0.50	+0.4
2,591,993	+				+1.2
2,591,993	+				+0.4
2,591,994	-				+2.2
2,591,994	-				+0.0
2,591,994	-				-0.5
2,591,994	-				-2.2
2,591,994	-				-1.4
2,591,994	-				+1.3
2,591,994	-				-1.0
2,592,019	+				-0.0
2,592,041	-				-1.5
2,592,041	-				-0.3
2,592,041	-				-1.8
2,592,041	-				-0.8
2,592,046	+				-0.1
2,592,046	+				+0.1
2,592,046	+				-1.8
2,592,046	+				-0.8
2,592,047	-				+0.2
2,592,047	-				-0.8
2,592,047	-				-0.8
2,592,047	-				-1.2
2,592,047	-				-0.2
2,592,047	-				+0.7
2,592,055	+				-0.8
2,592,055	+				+0.4
2,592,055	+				-0.6
2,592,055	+				-1.0
2,592,055	+				+0.0
2,592,055	+				-2.1
2,592,056	-				-0.6
2,592,056	-				-0.6
2,592,056	-				+0.2
2,592,056	-				-1.0
2,592,056	-				+0.7
2,592,056	-				+1.6
2,592,163	-				-0.2
2,592,210	+				+1.8
2,592,210	+				-0.5
2,592,210	+				-0.3
2,592,211	-				-1.2
2,592,211	-				-1.0
2,592,254	+				-1.0
2,592,290	+				-1.0
2,592,290	+				-2.1
2,592,290	+				-1.0
2,592,291	-				-1.8
2,592,291	-				-2.9
2,592,291	-				-2.0
2,592,364	+				-2.2
2,592,365	-				+0.8
2,592,394	+				+0.8
2,592,394	+				+3.0
2,592,395	-				-0.8
2,592,398	-				+0.5
2,592,507	+		DZA65_RS12140	0.12	-0.2
2,592,507	+		DZA65_RS12140	0.12	-2.8
2,592,507	+		DZA65_RS12140	0.12	+0.2
2,592,507	+		DZA65_RS12140	0.12	-0.1
2,592,507	+		DZA65_RS12140	0.12	+0.8
2,592,508	-		DZA65_RS12140	0.12	-1.8
2,592,508	-		DZA65_RS12140	0.12	+2.1
2,592,510	+		DZA65_RS12140	0.12	-1.3
2,592,511	-		DZA65_RS12140	0.12	+0.5
2,592,511	-		DZA65_RS12140	0.12	-0.3
2,592,511	-		DZA65_RS12140	0.12	-1.3
2,592,511	-		DZA65_RS12140	0.12	-0.6
2,592,511	-		DZA65_RS12140	0.12	-1.6
2,592,511	-		DZA65_RS12140	0.12	-0.9
2,592,528	+		DZA65_RS12140	0.12	-0.8
2,592,528	+		DZA65_RS12140	0.12	-0.2
2,592,528	+		DZA65_RS12140	0.12	-0.4
2,592,528	+				-0.5
2,592,528	+		DZA65_RS12140	0.12	+0.1
2,592,528	+		DZA65_RS12140	0.12	+1.1
2,592,528	+		DZA65_RS12140	0.12	+1.6
2,592,529	-		DZA65_RS12140	0.12	+2.2
2,592,529	-		DZA65_RS12140	0.12	-2.1
2,592,529	-		DZA65_RS12140	0.12	-2.5
2,592,529	-		DZA65_RS12140	0.12	-0.9
2,592,529	-		DZA65_RS12140	0.12	+0.6
2,592,529	-		DZA65_RS12140	0.12	+1.1
2,592,529	-		DZA65_RS12140	0.12	-0.4
2,592,529	-				-2.3
2,592,532	+		DZA65_RS12140	0.12	-0.2
2,592,532	+		DZA65_RS12140	0.12	-0.3
2,592,532	+		DZA65_RS12140	0.12	+1.1
2,592,532	+		DZA65_RS12140	0.12	+0.8
2,592,532	+		DZA65_RS12140	0.12	-0.8
2,592,532	+		DZA65_RS12140	0.12	-1.3
2,592,532	+		DZA65_RS12140	0.12	+0.3
2,592,532	+		DZA65_RS12140	0.12	-0.1
2,592,532	+		DZA65_RS12140	0.12	+0.8
2,592,533	-		DZA65_RS12140	0.13	-2.2
2,592,533	-		DZA65_RS12140	0.13	-0.2
2,592,533	-		DZA65_RS12140	0.13	-0.2
2,592,533	-		DZA65_RS12140	0.13	+0.4
2,592,533	-		DZA65_RS12140	0.13	-2.2
2,592,533	-		DZA65_RS12140	0.13	-1.5
2,592,533	-		DZA65_RS12140	0.13	+0.8
2,592,533	-		DZA65_RS12140	0.13	-2.5
2,592,533	-		DZA65_RS12140	0.13	-0.2
2,592,533	-		DZA65_RS12140	0.13	+0.4
2,592,533	-		DZA65_RS12140	0.13	-1.8
2,592,556	+		DZA65_RS12140	0.13	-0.2
2,592,556	+		DZA65_RS12140	0.13	+0.8
2,592,576	+		DZA65_RS12140	0.14	-1.2
2,592,576	+		DZA65_RS12140	0.14	+0.5
2,592,576	+		DZA65_RS12140	0.14	-2.0
2,592,576	+		DZA65_RS12140	0.14	+1.6
2,592,577	-		DZA65_RS12140	0.14	-0.2
2,592,577	-		DZA65_RS12140	0.14	-1.8
2,592,577	-		DZA65_RS12140	0.14	+0.2
2,592,577	-		DZA65_RS12140	0.14	+0.8
2,592,577	-		DZA65_RS12140	0.14	+1.0
2,592,610	-		DZA65_RS12140	0.15	-0.1
2,592,610	-		DZA65_RS12140	0.15	+0.3
2,592,610	-		DZA65_RS12140	0.15	+0.8
2,592,618	-		DZA65_RS12140	0.16	-0.2
2,592,618	-		DZA65_RS12140	0.16	-1.5
2,592,648	+		DZA65_RS12140	0.17	-1.1
2,592,648	+		DZA65_RS12140	0.17	+0.2
2,592,648	+		DZA65_RS12140	0.17	-0.0
2,592,649	-		DZA65_RS12140	0.17	-2.2
2,592,703	+		DZA65_RS12140	0.19	-1.2
2,592,713	+		DZA65_RS12140	0.19	+0.2
2,592,713	+		DZA65_RS12140	0.19	+0.2
2,592,753	+		DZA65_RS12140	0.21	-0.5
2,592,788	-		DZA65_RS12140	0.22	+0.5