Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11005

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,326,887	+				-0.1
2,327,039	+				-2.9
2,327,039	+				-0.5
2,327,039	+				-0.2
2,327,039	+				-0.8
2,327,039	+				-1.5
2,327,039	+				-0.0
2,327,039	+				+0.8
2,327,039	+				-0.9
2,327,040	-				-1.2
2,327,040	-				-1.0
2,327,040	-				-0.1
2,327,040	-				-0.6
2,327,040	-				-0.1
2,327,040	-				-0.8
2,327,040	-				-0.1
2,327,040	-				-0.2
2,327,085	+				+0.6
2,327,086	-				+0.5
2,327,097	+				+0.3
2,327,098	-				-2.5
2,327,098	-				-1.8
2,327,130	+				-0.1
2,327,130	+				-0.0
2,327,131	-				-1.4
2,327,165	+		DZA65_RS11000	0.11	+0.6
2,327,166	-		DZA65_RS11000	0.12	+0.2
2,327,222	+		DZA65_RS11000	0.23	-3.0
2,327,283	+		DZA65_RS11000	0.35	-0.1
2,327,283	+		DZA65_RS11000	0.35	-1.5
2,327,283	+		DZA65_RS11000	0.35	-1.2
2,327,284	-		DZA65_RS11000	0.36	-1.1
2,327,284	-				-2.0
2,327,442	+		DZA65_RS11000	0.68	-1.0
2,327,468	+		DZA65_RS11000	0.73	-2.0
2,327,468	+		DZA65_RS11000	0.73	+0.2
2,327,469	-		DZA65_RS11000	0.73	+1.6
2,327,471	+		DZA65_RS11000	0.74	+0.2
2,327,471	+		DZA65_RS11000	0.74	+0.8
2,327,471	+		DZA65_RS11000	0.74	-0.2
2,327,471	+		DZA65_RS11000	0.74	+1.8
2,327,472	-		DZA65_RS11000	0.74	-0.8
2,327,472	-		DZA65_RS11000	0.74	-0.0
2,327,472	-		DZA65_RS11000	0.74	-1.1
2,327,472	-		DZA65_RS11000	0.74	-0.7
2,327,540	+		DZA65_RS11000	0.88	-2.4
2,327,541	-		DZA65_RS11000	0.88	+0.7
2,327,623	+				-3.1
2,327,640	+				-1.8
2,327,731	+				-0.2
2,327,732	-				-0.8
2,327,738	+				-2.0
2,327,740	+				-1.2
2,327,740	+				+0.8
2,327,740	+				-0.8
2,327,740	+				-0.5
2,327,740	+				+0.2
2,327,759	+				+0.8
2,327,783	+				+2.0
2,327,784	-				+2.0
2,327,828	-		DZA65_RS11005	0.16	+1.9
2,327,830	+		DZA65_RS11005	0.17	+0.7
2,327,831	-		DZA65_RS11005	0.17	+1.2
2,327,833	+		DZA65_RS11005	0.17	+0.2
2,327,833	+		DZA65_RS11005	0.17	+0.5
2,327,834	-		DZA65_RS11005	0.18	+0.6
2,327,834	-		DZA65_RS11005	0.18	+0.8
2,327,834	-		DZA65_RS11005	0.18	+1.0
2,327,852	+		DZA65_RS11005	0.21	+1.0
2,327,853	-		DZA65_RS11005	0.21	-0.3
2,327,876	+		DZA65_RS11005	0.25	-2.0
2,327,890	-		DZA65_RS11005	0.27	+0.2
2,327,894	+		DZA65_RS11005	0.28	-0.9
2,327,895	-		DZA65_RS11005	0.28	-0.9
2,327,895	-		DZA65_RS11005	0.28	-0.4
2,327,915	-		DZA65_RS11005	0.31	-1.8
2,328,053	-		DZA65_RS11005	0.54	-1.8
2,328,053	-		DZA65_RS11005	0.54	-1.5
2,328,053	-		DZA65_RS11005	0.54	-0.2
2,328,053	-		DZA65_RS11005	0.54	-1.5
2,328,085	+		DZA65_RS11005	0.60	-1.8
2,328,085	+		DZA65_RS11005	0.60	-0.8
2,328,085	+		DZA65_RS11005	0.60	-0.5
2,328,085	+		DZA65_RS11005	0.60	+3.1
2,328,085	+		DZA65_RS11005	0.60	+0.8
2,328,086	-		DZA65_RS11005	0.60	-0.6
2,328,242	+		DZA65_RS11005	0.86	+0.9
2,328,243	-		DZA65_RS11005	0.86	+0.2
2,328,243	-		DZA65_RS11005	0.86	-0.5
2,328,295	-				+0.5
2,328,295	-				-1.8
2,328,324	-				-1.2
2,328,336	-				-0.8
2,328,414	+				-0.3
2,328,587	+				+0.3
2,328,587	+				-2.2
2,328,588	-				-0.4
2,328,611	-				-0.8
2,328,611	-				+1.4
2,328,611	-				-0.8
2,328,613	-				-1.8
2,328,618	-				+0.2
2,328,618	-				-0.2
2,328,680	-				+0.2
2,328,737	-				-1.5
2,328,745	-				+0.8
2,328,745	-				+0.3
2,328,745	-				-0.8
2,328,745	-				+2.1
2,328,837	+				+1.2
2,328,840	+				+1.2
2,328,867	+				-0.6
2,328,867	+				-0.7
2,328,876	+				-1.2
2,328,878	+				+1.1
2,328,878	+				-1.4
2,328,878	+				+0.5
2,328,878	+				+0.6
2,328,878	+				+0.1
2,328,878	+				-1.5
2,328,878	+				-0.4
2,328,878	+				-0.2
2,328,883	+				+0.1
2,328,883	+				+1.1
2,328,883	+				-0.8
2,328,883	+				-0.8
2,328,883	+				-2.0
2,328,884	-				-0.8
2,328,884	-				+0.8
2,328,884	-				-1.5
2,328,884	-				-1.5
2,328,884	-				+0.1
2,329,007	+				-1.6
2,329,073	+		DZA65_RS11010	0.16	-1.3
2,329,074	-		DZA65_RS11010	0.16	+1.3
2,329,074	-		DZA65_RS11010	0.16	+0.1
2,329,083	+		DZA65_RS11010	0.20	+0.0
2,329,083	+		DZA65_RS11010	0.20	-0.7
2,329,083	+		DZA65_RS11010	0.20	-0.2
2,329,083	+		DZA65_RS11010	0.20	-0.4
2,329,083	+		DZA65_RS11010	0.20	-1.0
2,329,083	+		DZA65_RS11010	0.20	+0.8
2,329,084	-		DZA65_RS11010	0.20	-0.8
2,329,084	-		DZA65_RS11010	0.20	+1.4
2,329,084	-		DZA65_RS11010	0.20	+0.6
2,329,084	-		DZA65_RS11010	0.20	-0.1
2,329,084	-		DZA65_RS11010	0.20	-0.2
2,329,084	-		DZA65_RS11010	0.20	+0.8
2,329,136	+		DZA65_RS11010	0.39	+1.8
2,329,136	+		DZA65_RS11010	0.39	+1.0
2,329,136	+		DZA65_RS11010	0.39	-0.5
2,329,136	+		DZA65_RS11010	0.39	+0.8
2,329,137	-		DZA65_RS11010	0.40	+0.5
2,329,150	+		DZA65_RS11010	0.44	-0.1
2,329,174	+		DZA65_RS11010	0.53	+0.1
2,329,202	+				+0.8
2,329,202	+		DZA65_RS11010	0.64	+2.4
2,329,202	+		DZA65_RS11010	0.64	+1.8
2,329,218	+		DZA65_RS11010	0.70	-1.1
2,329,219	-		DZA65_RS11010	0.70	+0.2
2,329,219	-		DZA65_RS11010	0.70	+0.1
2,329,227	+		DZA65_RS11010	0.73	-0.6
2,329,227	+				+0.1
2,329,228	-		DZA65_RS11010	0.73	-2.0
2,329,279	+				-0.2
2,329,279	+				-3.3
2,329,279	+				+1.4
2,329,279	+				-1.0
2,329,279	+				-1.5
2,329,279	+				-1.8
2,329,280	-				-1.5
2,329,280	-				-0.9
2,329,280	-				+0.6
2,329,280	-				+0.2
2,329,320	-				-0.4