Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10995

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,324,657	-		DZA65_RS10990	0.10	-2.3
2,324,657	-		DZA65_RS10990	0.10	-1.1
2,324,661	-		DZA65_RS10990	0.11	+1.8
2,324,661	-		DZA65_RS10990	0.11	+1.0
2,324,666	+		DZA65_RS10990	0.11	-1.7
2,324,666	+		DZA65_RS10990	0.11	-0.4
2,324,666	+		DZA65_RS10990	0.11	+0.2
2,324,666	+		DZA65_RS10990	0.11	-0.2
2,324,770	-		DZA65_RS10990	0.25	+3.4
2,324,770	-		DZA65_RS10990	0.25	+2.4
2,324,953	-		DZA65_RS10990	0.49	+1.5
2,324,953	-		DZA65_RS10990	0.49	-0.4
2,324,953	-		DZA65_RS10990	0.49	-0.2
2,324,953	-		DZA65_RS10990	0.49	-0.2
2,325,054	+		DZA65_RS10990	0.62	+0.3
2,325,054	+		DZA65_RS10990	0.62	-0.6
2,325,054	+		DZA65_RS10990	0.62	-0.0
2,325,054	+		DZA65_RS10990	0.62	-0.8
2,325,055	-		DZA65_RS10990	0.62	+1.6
2,325,055	-		DZA65_RS10990	0.62	-2.5
2,325,138	+		DZA65_RS10990	0.73	-3.0
2,325,138	+		DZA65_RS10990	0.73	-0.6
2,325,138	+		DZA65_RS10990	0.73	-1.0
2,325,155	+		DZA65_RS10990	0.75	+1.0
2,325,156	-		DZA65_RS10990	0.75	-0.9
2,325,156	-		DZA65_RS10990	0.75	-0.5
2,325,156	-		DZA65_RS10990	0.75	+0.2
2,325,246	-		DZA65_RS10990	0.87	+2.2
2,325,255	-		DZA65_RS10990	0.88	-0.9
2,325,309	+				+0.2
2,325,310	-				-1.1
2,325,341	+				-2.0
2,325,418	+				-1.4
2,325,419	-				-0.5
2,325,433	-				-2.0
2,325,502	+				-1.1
2,325,502	+				-0.0
2,325,503	-				-1.0
2,325,503	-				-2.2
2,325,503	-				+0.8
2,325,503	-				+1.8
2,325,503	-				-0.8
2,325,506	+				+0.1
2,325,536	-				-1.5
2,325,536	-				-1.3
2,325,536	-				-0.2
2,325,545	+				-2.2
2,325,545	+				+0.6
2,325,546	-				+1.6
2,325,546	-				-1.8
2,325,575	-				+1.5
2,325,600	+				-1.4
2,325,600	+				-0.2
2,325,600	+				+0.8
2,325,600	+				-0.8
2,325,601	-				-1.2
2,325,601	-				+1.1
2,325,601	-				+0.2
2,325,601	-				+0.8
2,325,638	+				-0.3
2,325,649	+				-0.1
2,325,657	-				+0.0
2,325,720	+				+0.6
2,325,732	+				+0.8
2,325,733	-				+0.5
2,325,766	-		DZA65_RS10995	0.13	+1.4
2,325,937	+		DZA65_RS10995	0.29	+0.0
2,325,937	+		DZA65_RS10995	0.29	-0.9
2,325,937	+		DZA65_RS10995	0.29	+0.4
2,325,937	+		DZA65_RS10995	0.29	-0.5
2,325,937	+		DZA65_RS10995	0.29	+0.2
2,325,937	+		DZA65_RS10995	0.29	-1.5
2,325,937	+		DZA65_RS10995	0.29	+1.4
2,325,937	+		DZA65_RS10995	0.29	-0.4
2,325,937	+		DZA65_RS10995	0.29	+1.2
2,325,937	+		DZA65_RS10995	0.29	+0.4
2,325,937	+		DZA65_RS10995	0.29	-1.0
2,325,938	-		DZA65_RS10995	0.29	-2.2
2,325,938	-		DZA65_RS10995	0.29	-0.0
2,325,938	-		DZA65_RS10995	0.29	-0.2
2,325,938	-		DZA65_RS10995	0.29	-1.7
2,325,938	-		DZA65_RS10995	0.29	+0.0
2,326,168	+		DZA65_RS10995	0.51	-1.6
2,326,169	-		DZA65_RS10995	0.51	-1.0
2,326,170	+		DZA65_RS10995	0.51	-0.5
2,326,170	+		DZA65_RS10995	0.51	+0.2
2,326,170	+		DZA65_RS10995	0.51	-0.2
2,326,170	+		DZA65_RS10995	0.51	-0.2
2,326,170	+		DZA65_RS10995	0.51	-1.0
2,326,171	-		DZA65_RS10995	0.52	-1.4
2,326,171	-		DZA65_RS10995	0.52	-0.2
2,326,171	-		DZA65_RS10995	0.52	-0.2
2,326,171	-		DZA65_RS10995	0.52	-1.4
2,326,171	-		DZA65_RS10995	0.52	-1.2
2,326,281	+		DZA65_RS10995	0.62	-0.6
2,326,281	+				+0.6
2,326,282	-		DZA65_RS10995	0.62	+0.9
2,326,282	-		DZA65_RS10995	0.62	+0.0
2,326,282	-		DZA65_RS10995	0.62	-1.1
2,326,299	+		DZA65_RS10995	0.64	-0.1
2,326,299	+		DZA65_RS10995	0.64	-1.8
2,326,300	-		DZA65_RS10995	0.64	-1.5
2,326,300	-		DZA65_RS10995	0.64	-0.9
2,326,312	+		DZA65_RS10995	0.65	-2.7
2,326,312	+		DZA65_RS10995	0.65	+0.8
2,326,312	+		DZA65_RS10995	0.65	-0.4
2,326,313	-		DZA65_RS10995	0.65	+0.1
2,326,313	-		DZA65_RS10995	0.65	+1.2
2,326,313	-		DZA65_RS10995	0.65	+0.8
2,326,320	+		DZA65_RS10995	0.66	-0.4
2,326,321	-		DZA65_RS10995	0.66	+0.8
2,326,557	-		DZA65_RS10995	0.88	-0.7
2,326,572	+		DZA65_RS10995	0.90	-1.3
2,326,573	-				+0.2
2,326,663	-				+0.4
2,326,675	+				-0.8
2,326,675	+				-0.8
2,326,676	-				+0.1
2,326,676	-				-0.2
2,326,680	+				-1.0
2,326,681	-				+1.4
2,326,681	-				-0.8
2,326,681	-				+1.8
2,326,887	+				-0.1
2,327,039	+				-2.9
2,327,039	+				-0.5
2,327,039	+				-0.2
2,327,039	+				-0.8
2,327,039	+				-1.5
2,327,039	+				-0.0
2,327,039	+				+0.8
2,327,039	+				-0.9
2,327,040	-				-1.2
2,327,040	-				-1.0
2,327,040	-				-0.1
2,327,040	-				-0.6
2,327,040	-				-0.1
2,327,040	-				-0.8
2,327,040	-				-0.1
2,327,040	-				-0.2
2,327,085	+				+0.6
2,327,086	-				+0.5
2,327,097	+				+0.3
2,327,098	-				-2.5
2,327,098	-				-1.8
2,327,130	+				-0.1
2,327,130	+				-0.0
2,327,131	-				-1.4
2,327,165	+		DZA65_RS11000	0.11	+0.6
2,327,166	-		DZA65_RS11000	0.12	+0.2
2,327,222	+		DZA65_RS11000	0.23	-3.0
2,327,283	+		DZA65_RS11000	0.35	-0.1
2,327,283	+		DZA65_RS11000	0.35	-1.5
2,327,283	+		DZA65_RS11000	0.35	-1.2
2,327,284	-		DZA65_RS11000	0.36	-1.1
2,327,284	-				-2.0
2,327,442	+		DZA65_RS11000	0.68	-1.0
2,327,468	+		DZA65_RS11000	0.73	-2.0
2,327,468	+		DZA65_RS11000	0.73	+0.2
2,327,469	-		DZA65_RS11000	0.73	+1.6
2,327,471	+		DZA65_RS11000	0.74	+0.2
2,327,471	+		DZA65_RS11000	0.74	+0.8
2,327,471	+		DZA65_RS11000	0.74	-0.2
2,327,471	+		DZA65_RS11000	0.74	+1.8
2,327,472	-		DZA65_RS11000	0.74	-0.8
2,327,472	-		DZA65_RS11000	0.74	-0.0
2,327,472	-		DZA65_RS11000	0.74	-1.1
2,327,472	-		DZA65_RS11000	0.74	-0.7
2,327,540	+		DZA65_RS11000	0.88	-2.4
2,327,541	-		DZA65_RS11000	0.88	+0.7
2,327,623	+				-3.1
2,327,640	+				-1.8