Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07115

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07110 and DZA65_RS07115 are separated by 25 nucleotidesDZA65_RS07115 and DZA65_RS07120 are separated by 1 nucleotidesDZA65_RS07120 and DZA65_RS07125 overlap by 4 nucleotides DZA65_RS07110: DZA65_RS07110 - dTDP-glucose 4,6-dehydratase, at 1,476,832 to 1,477,896 _RS07110 DZA65_RS07115: DZA65_RS07115 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,477,922 to 1,478,791 _RS07115 DZA65_RS07120: DZA65_RS07120 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,478,793 to 1,479,329 _RS07120 DZA65_RS07125: DZA65_RS07125 - dTDP-4-dehydrorhamnose reductase, at 1,479,326 to 1,480,180 _RS07125 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1476.937 kb on + strandat 1476.937 kb on + strandat 1476.938 kb on - strandat 1477.132 kb on - strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.145 kb on - strand, within DZA65_RS07110at 1477.145 kb on - strandat 1477.240 kb on + strand, within DZA65_RS07110at 1477.241 kb on - strand, within DZA65_RS07110at 1477.360 kb on + strand, within DZA65_RS07110at 1477.399 kb on + strand, within DZA65_RS07110at 1477.399 kb on + strand, within DZA65_RS07110at 1477.400 kb on - strand, within DZA65_RS07110at 1477.400 kb on - strand, within DZA65_RS07110at 1477.509 kb on - strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.511 kb on - strand, within DZA65_RS07110at 1477.511 kb on - strand, within DZA65_RS07110at 1477.537 kb on + strand, within DZA65_RS07110at 1477.538 kb on - strand, within DZA65_RS07110at 1477.538 kb on - strand, within DZA65_RS07110at 1477.573 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strandat 1477.591 kb on - strand, within DZA65_RS07110at 1477.591 kb on - strand, within DZA65_RS07110at 1477.730 kb on - strand, within DZA65_RS07110at 1477.819 kb on + strandat 1477.819 kb on + strandat 1477.820 kb on - strandat 1477.820 kb on - strandat 1477.864 kb on + strandat 1477.864 kb on + strandat 1477.864 kb on + strandat 1477.865 kb on - strandat 1477.865 kb on - strandat 1477.880 kb on + strandat 1477.880 kb on + strandat 1477.881 kb on - strandat 1477.894 kb on + strandat 1477.895 kb on - strandat 1477.935 kb on + strandat 1477.935 kb on + strandat 1477.935 kb on + strandat 1477.935 kb on + strandat 1477.935 kb on + strandat 1478.007 kb on - strandat 1478.024 kb on + strand, within DZA65_RS07115at 1478.024 kb on + strand, within DZA65_RS07115at 1478.024 kb on + strand, within DZA65_RS07115at 1478.024 kb on + strand, within DZA65_RS07115at 1478.024 kb on + strand, within DZA65_RS07115at 1478.024 kb on + strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.025 kb on - strand, within DZA65_RS07115at 1478.210 kb on - strand, within DZA65_RS07115at 1478.441 kb on + strand, within DZA65_RS07115at 1478.441 kb on + strand, within DZA65_RS07115at 1478.441 kb on + strand, within DZA65_RS07115at 1478.441 kb on + strand, within DZA65_RS07115at 1478.447 kb on + strand, within DZA65_RS07115at 1478.448 kb on - strand, within DZA65_RS07115at 1478.448 kb on - strand, within DZA65_RS07115at 1478.531 kb on + strand, within DZA65_RS07115at 1478.531 kb on + strand, within DZA65_RS07115at 1478.531 kb on + strand, within DZA65_RS07115at 1478.762 kb on + strandat 1478.779 kb on + strandat 1478.781 kb on + strandat 1478.781 kb on + strandat 1478.781 kb on + strandat 1478.781 kb on + strandat 1478.781 kb on + strandat 1478.792 kb on + strandat 1478.807 kb on + strandat 1478.807 kb on + strandat 1479.072 kb on + strand, within DZA65_RS07120at 1479.073 kb on - strand, within DZA65_RS07120at 1479.092 kb on - strand, within DZA65_RS07120at 1479.201 kb on + strand, within DZA65_RS07120at 1479.402 kb on + strandat 1479.402 kb on + strandat 1479.402 kb on + strandat 1479.403 kb on - strandat 1479.403 kb on - strandat 1479.403 kb on - strandat 1479.430 kb on + strand, within DZA65_RS07125at 1479.450 kb on + strand, within DZA65_RS07125at 1479.450 kb on + strand, within DZA65_RS07125at 1479.450 kb on + strand, within DZA65_RS07125at 1479.450 kb on + strand, within DZA65_RS07125at 1479.450 kb on + strand, within DZA65_RS07125at 1479.451 kb on - strandat 1479.451 kb on - strand, within DZA65_RS07125at 1479.503 kb on + strand, within DZA65_RS07125at 1479.504 kb on - strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.612 kb on + strand, within DZA65_RS07125at 1479.613 kb on - strand, within DZA65_RS07125at 1479.613 kb on - strand, within DZA65_RS07125at 1479.613 kb on - strand, within DZA65_RS07125at 1479.613 kb on - strand, within DZA65_RS07125at 1479.629 kb on + strand, within DZA65_RS07125at 1479.629 kb on + strand, within DZA65_RS07125at 1479.629 kb on + strand, within DZA65_RS07125at 1479.629 kb on + strand, within DZA65_RS07125at 1479.629 kb on + strand, within DZA65_RS07125at 1479.630 kb on - strand, within DZA65_RS07125at 1479.630 kb on - strand, within DZA65_RS07125at 1479.630 kb on - strand, within DZA65_RS07125at 1479.659 kb on + strand, within DZA65_RS07125at 1479.659 kb on + strand, within DZA65_RS07125at 1479.695 kb on + strand, within DZA65_RS07125at 1479.695 kb on + strand, within DZA65_RS07125at 1479.695 kb on + strand, within DZA65_RS07125at 1479.754 kb on + strand, within DZA65_RS07125at 1479.754 kb on + strandat 1479.764 kb on - strand, within DZA65_RS07125

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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1,476,937 + -0.8
1,476,937 + -2.1
1,476,938 - -1.7
1,477,132 - DZA65_RS07110 0.28 -1.0
1,477,144 + DZA65_RS07110 0.29 -2.0
1,477,144 + DZA65_RS07110 0.29 -0.9
1,477,144 + DZA65_RS07110 0.29 -0.8
1,477,144 + DZA65_RS07110 0.29 -1.9
1,477,144 + DZA65_RS07110 0.29 -0.9
1,477,145 - DZA65_RS07110 0.29 -1.8
1,477,145 - -1.8
1,477,240 + DZA65_RS07110 0.38 -0.8
1,477,241 - DZA65_RS07110 0.38 -1.2
1,477,360 + DZA65_RS07110 0.50 -3.5
1,477,399 + DZA65_RS07110 0.53 -1.7
1,477,399 + DZA65_RS07110 0.53 -1.1
1,477,400 - DZA65_RS07110 0.53 +1.1
1,477,400 - DZA65_RS07110 0.53 -0.6
1,477,509 - DZA65_RS07110 0.64 -4.0
1,477,510 + DZA65_RS07110 0.64 +0.7
1,477,510 + DZA65_RS07110 0.64 -1.8
1,477,510 + DZA65_RS07110 0.64 -0.8
1,477,510 + DZA65_RS07110 0.64 -1.8
1,477,510 + DZA65_RS07110 0.64 -0.0
1,477,510 + DZA65_RS07110 0.64 -0.2
1,477,510 + DZA65_RS07110 0.64 -2.8
1,477,510 + DZA65_RS07110 0.64 -2.0
1,477,510 + DZA65_RS07110 0.64 -2.3
1,477,511 - DZA65_RS07110 0.64 -1.5
1,477,511 - DZA65_RS07110 0.64 -2.9
1,477,537 + DZA65_RS07110 0.66 -1.8
1,477,538 - DZA65_RS07110 0.66 -1.1
1,477,538 - DZA65_RS07110 0.66 +1.0
1,477,573 + DZA65_RS07110 0.70 -1.8
1,477,590 + DZA65_RS07110 0.71 -0.6
1,477,590 + DZA65_RS07110 0.71 -1.6
1,477,590 + DZA65_RS07110 0.71 -1.2
1,477,590 + DZA65_RS07110 0.71 -1.8
1,477,590 + -1.8
1,477,591 - DZA65_RS07110 0.71 +0.4
1,477,591 - DZA65_RS07110 0.71 +0.7
1,477,730 - DZA65_RS07110 0.84 -0.6
1,477,819 + -0.0
1,477,819 + -1.3
1,477,820 - -1.6
1,477,820 - -0.0
1,477,864 + -0.1
1,477,864 + -2.3
1,477,864 + -2.8
1,477,865 - +1.3
1,477,865 - -0.3
1,477,880 + -0.6
1,477,880 + -3.8
1,477,881 - -2.0
1,477,894 + -1.3
1,477,895 - -0.4
1,477,935 + -1.3
1,477,935 + -0.8
1,477,935 + -0.3
1,477,935 + -0.8
1,477,935 + -1.8
1,478,007 - -1.6
1,478,024 + DZA65_RS07115 0.12 -0.6
1,478,024 + DZA65_RS07115 0.12 -1.3
1,478,024 + DZA65_RS07115 0.12 -0.6
1,478,024 + DZA65_RS07115 0.12 -2.5
1,478,024 + DZA65_RS07115 0.12 -1.7
1,478,024 + DZA65_RS07115 0.12 -1.3
1,478,025 - DZA65_RS07115 0.12 -0.0
1,478,025 - DZA65_RS07115 0.12 -1.4
1,478,025 - DZA65_RS07115 0.12 -2.3
1,478,025 - DZA65_RS07115 0.12 -1.6
1,478,025 - DZA65_RS07115 0.12 -1.2
1,478,025 - DZA65_RS07115 0.12 -0.8
1,478,210 - DZA65_RS07115 0.33 +1.0
1,478,441 + DZA65_RS07115 0.60 +0.7
1,478,441 + DZA65_RS07115 0.60 -2.3
1,478,441 + DZA65_RS07115 0.60 +0.2
1,478,441 + DZA65_RS07115 0.60 -0.0
1,478,447 + DZA65_RS07115 0.60 -1.6
1,478,448 - DZA65_RS07115 0.60 +0.2
1,478,448 - DZA65_RS07115 0.60 -2.6
1,478,531 + DZA65_RS07115 0.70 -0.0
1,478,531 + DZA65_RS07115 0.70 -1.8
1,478,531 + DZA65_RS07115 0.70 -1.0
1,478,762 + -0.4
1,478,779 + -0.0
1,478,781 + +2.2
1,478,781 + -0.3
1,478,781 + +1.0
1,478,781 + -1.6
1,478,781 + -1.2
1,478,792 + +1.6
1,478,807 + -0.0
1,478,807 + -0.7
1,479,072 + DZA65_RS07120 0.52 +1.0
1,479,073 - DZA65_RS07120 0.52 +0.2
1,479,092 - DZA65_RS07120 0.56 +0.2
1,479,201 + DZA65_RS07120 0.76 -3.3
1,479,402 + -0.3
1,479,402 + -1.6
1,479,402 + +0.5
1,479,403 - +0.5
1,479,403 - -0.4
1,479,403 - +2.1
1,479,430 + DZA65_RS07125 0.12 -1.0
1,479,450 + DZA65_RS07125 0.15 -2.3
1,479,450 + DZA65_RS07125 0.15 +1.5
1,479,450 + DZA65_RS07125 0.15 +0.4
1,479,450 + DZA65_RS07125 0.15 +0.4
1,479,450 + DZA65_RS07125 0.15 -0.0
1,479,451 - -2.3
1,479,451 - DZA65_RS07125 0.15 +0.7
1,479,503 + DZA65_RS07125 0.21 -2.3
1,479,504 - DZA65_RS07125 0.21 -1.3
1,479,612 + DZA65_RS07125 0.33 -0.0
1,479,612 + DZA65_RS07125 0.33 -0.0
1,479,612 + DZA65_RS07125 0.33 -1.5
1,479,612 + DZA65_RS07125 0.33 +0.4
1,479,612 + DZA65_RS07125 0.33 +0.7
1,479,612 + DZA65_RS07125 0.33 -0.7
1,479,612 + DZA65_RS07125 0.33 -0.2
1,479,612 + DZA65_RS07125 0.33 -0.3
1,479,613 - DZA65_RS07125 0.34 +1.7
1,479,613 - DZA65_RS07125 0.34 -0.6
1,479,613 - DZA65_RS07125 0.34 -1.2
1,479,613 - DZA65_RS07125 0.34 -0.6
1,479,629 + DZA65_RS07125 0.35 +2.9
1,479,629 + DZA65_RS07125 0.35 -0.6
1,479,629 + DZA65_RS07125 0.35 -2.6
1,479,629 + DZA65_RS07125 0.35 +1.8
1,479,629 + DZA65_RS07125 0.35 -0.0
1,479,630 - DZA65_RS07125 0.36 -1.0
1,479,630 - DZA65_RS07125 0.36 -1.6
1,479,630 - DZA65_RS07125 0.36 -0.4
1,479,659 + DZA65_RS07125 0.39 -1.3
1,479,659 + DZA65_RS07125 0.39 -0.3
1,479,695 + DZA65_RS07125 0.43 -0.6
1,479,695 + DZA65_RS07125 0.43 -1.0
1,479,695 + DZA65_RS07125 0.43 +0.7
1,479,754 + DZA65_RS07125 0.50 -2.3
1,479,754 + -1.0
1,479,764 - DZA65_RS07125 0.51 -0.0

Or see this region's nucleotide sequence