Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05020

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Norland
				remove
1,034,344	+			+1.9
1,034,345	-			-0.2
1,034,350	+			-0.6
1,034,351	-			-1.5
1,034,379	+			-0.1
1,034,379	+			-1.4
1,034,379	+			+1.1
1,034,379	+			-1.7
1,034,379	+			+1.1
1,034,379	+			-0.3
1,034,379	+			-0.5
1,034,379	+			+0.1
1,034,379	+			+0.4
1,034,380	-			+0.0
1,034,380	-			+0.6
1,034,380	-			-0.7
1,034,380	-			-1.7
1,034,557	+	DZA65_RS05005	0.58	-1.5
1,034,560	+	DZA65_RS05005	0.59	-1.1
1,034,560	+	DZA65_RS05005	0.59	-0.5
1,034,560	+	DZA65_RS05005	0.59	+0.4
1,034,560	+	DZA65_RS05005	0.59	+0.5
1,034,560	+	DZA65_RS05005	0.59	-0.5
1,034,561	-	DZA65_RS05005	0.59	-1.4
1,034,561	-	DZA65_RS05005	0.59	+1.1
1,034,561	-	DZA65_RS05005	0.59	+0.3
1,034,561	-	DZA65_RS05005	0.59	+1.9
1,034,570	-	DZA65_RS05005	0.62	-0.5
1,034,580	+	DZA65_RS05005	0.65	-0.1
1,034,620	+	DZA65_RS05005	0.77	-1.5
1,034,621	-	DZA65_RS05005	0.78	-1.7
1,034,624	+	DZA65_RS05005	0.78	-1.4
1,034,624	+	DZA65_RS05005	0.78	+0.1
1,034,624	+	DZA65_RS05005	0.78	-2.1
1,034,624	+	DZA65_RS05005	0.78	-1.7
1,034,624	+	DZA65_RS05005	0.78	+0.5
1,034,624	+	DZA65_RS05005	0.78	+0.1
1,034,624	+	DZA65_RS05005	0.78	+0.2
1,034,624	+	DZA65_RS05005	0.78	-1.4
1,034,624	+	DZA65_RS05005	0.78	+1.1
1,034,625	-	DZA65_RS05005	0.79	-0.1
1,034,625	-	DZA65_RS05005	0.79	-1.2
1,034,625	-	DZA65_RS05005	0.79	-0.3
1,034,625	-	DZA65_RS05005	0.79	-0.2
1,034,625	-	DZA65_RS05005	0.79	-2.1
1,034,625	-	DZA65_RS05005	0.79	+0.1
1,034,625	-	DZA65_RS05005	0.79	-0.5
1,034,625	-	DZA65_RS05005	0.79	-1.3
1,034,625	-	DZA65_RS05005	0.79	-0.7
1,034,625	-	DZA65_RS05005	0.79	-1.3
1,034,674	+			+1.6
1,034,731	+	DZA65_RS05010	0.15	+0.1
1,034,731	+	DZA65_RS05010	0.15	-0.2
1,034,731	+	DZA65_RS05010	0.15	-2.9
1,034,731	+	DZA65_RS05010	0.15	-0.4
1,034,731	+	DZA65_RS05010	0.15	-2.3
1,034,731	+	DZA65_RS05010	0.15	-1.9
1,034,731	+	DZA65_RS05010	0.15	-0.7
1,034,731	+	DZA65_RS05010	0.15	-1.4
1,034,731	+	DZA65_RS05010	0.15	+3.6
1,034,731	+	DZA65_RS05010	0.15	-0.9
1,034,731	+	DZA65_RS05010	0.15	-1.8
1,034,731	+	DZA65_RS05010	0.15	-0.4
1,034,731	+	DZA65_RS05010	0.15	+0.9
1,034,731	+	DZA65_RS05010	0.15	+0.7
1,034,731	+	DZA65_RS05010	0.15	+0.1
1,034,732	-	DZA65_RS05010	0.16	-0.1
1,034,732	-	DZA65_RS05010	0.16	+0.3
1,034,732	-	DZA65_RS05010	0.16	-0.4
1,034,732	-	DZA65_RS05010	0.16	+0.4
1,034,732	-	DZA65_RS05010	0.16	-0.6
1,034,732	-	DZA65_RS05010	0.16	-2.4
1,034,732	-	DZA65_RS05010	0.16	-1.5
1,034,732	-	DZA65_RS05010	0.16	+1.4
1,034,732	-	DZA65_RS05010	0.16	-0.5
1,034,771	+	DZA65_RS05010	0.32	-0.6
1,034,772	-	DZA65_RS05010	0.32	-0.5
1,034,774	+	DZA65_RS05010	0.33	-1.9
1,034,775	-	DZA65_RS05010	0.33	-2.1
1,034,885	+	DZA65_RS05010	0.79	-0.3
1,034,911	+	DZA65_RS05010	0.89	-1.3
1,034,911	+	DZA65_RS05010	0.89	-0.5
1,034,912	-			-2.6
1,034,930	+			-2.4
1,034,930	+			-1.5
1,034,930	+			-1.1
1,034,931	-			-0.7
1,034,931	-			+0.1
1,034,931	-			+0.2
1,034,931	-			-0.4
1,034,931	-			+1.2
1,034,931	-			-1.3
1,034,931	-			+0.6
1,034,934	+			-2.5
1,034,934	+			+1.1
1,034,956	-			-1.0
1,035,012	+	DZA65_RS05015	0.17	-1.9
1,035,012	+	DZA65_RS05015	0.17	-0.5
1,035,013	-	DZA65_RS05015	0.17	+0.3
1,035,013	-	DZA65_RS05015	0.17	+0.6
1,035,013	-	DZA65_RS05015	0.17	-3.2
1,035,029	+	DZA65_RS05015	0.22	-0.1
1,035,029	+	DZA65_RS05015	0.22	+0.5
1,035,029	+	DZA65_RS05015	0.22	+1.4
1,035,030	-	DZA65_RS05015	0.22	-0.9
1,035,030	-	DZA65_RS05015	0.22	+3.6
1,035,030	-	DZA65_RS05015	0.22	+1.4
1,035,091	+	DZA65_RS05015	0.40	+0.6
1,035,091	+	DZA65_RS05015	0.40	+0.5
1,035,092	-	DZA65_RS05015	0.40	-1.9
1,035,092	-	DZA65_RS05015	0.40	-0.5
1,035,092	-	DZA65_RS05015	0.40	-0.5
1,035,092	-	DZA65_RS05015	0.40	-1.5
1,035,092	-	DZA65_RS05015	0.40	-1.3
1,035,093	+	DZA65_RS05015	0.40	-1.8
1,035,093	+	DZA65_RS05015	0.40	+0.1
1,035,094	-	DZA65_RS05015	0.41	-1.1
1,035,094	-	DZA65_RS05015	0.41	-1.9
1,035,094	-	DZA65_RS05015	0.41	+0.6
1,035,094	-	DZA65_RS05015	0.41	-1.2
1,035,094	-	DZA65_RS05015	0.41	+0.1
1,035,094	-	DZA65_RS05015	0.41	+0.1
1,035,094	-	DZA65_RS05015	0.41	-1.3
1,035,094	-	DZA65_RS05015	0.41	+2.2
1,035,122	+	DZA65_RS05015	0.49	-0.1
1,035,122	+	DZA65_RS05015	0.49	+1.0
1,035,122	+	DZA65_RS05015	0.49	+1.1
1,035,225	+	DZA65_RS05015	0.79	-0.4
1,035,225	+	DZA65_RS05015	0.79	-0.3
1,035,225	+	DZA65_RS05015	0.79	-0.1
1,035,225	+	DZA65_RS05015	0.79	-1.3
1,035,226	-	DZA65_RS05015	0.80	-1.1
1,035,346	+			-1.3
1,035,360	+	DZA65_RS05020	0.13	+0.6
1,035,360	+	DZA65_RS05020	0.13	+0.6
1,035,360	+	DZA65_RS05020	0.13	-2.3
1,035,361	-	DZA65_RS05020	0.14	-2.1
1,035,361	-	DZA65_RS05020	0.14	-1.5
1,035,362	+	DZA65_RS05020	0.14	-0.9
1,035,362	+	DZA65_RS05020	0.14	-0.3
1,035,362	+	DZA65_RS05020	0.14	-1.5
1,035,362	+	DZA65_RS05020	0.14	-0.9
1,035,362	+	DZA65_RS05020	0.14	-0.5
1,035,362	+	DZA65_RS05020	0.14	+0.1
1,035,362	+			-1.5
1,035,362	+	DZA65_RS05020	0.14	+1.1
1,035,362	+	DZA65_RS05020	0.14	-0.2
1,035,362	+	DZA65_RS05020	0.14	+2.3
1,035,362	+	DZA65_RS05020	0.14	-3.2
1,035,362	+	DZA65_RS05020	0.14	+0.2
1,035,362	+	DZA65_RS05020	0.14	-0.9
1,035,362	+	DZA65_RS05020	0.14	+0.5
1,035,362	+	DZA65_RS05020	0.14	-1.9
1,035,362	+	DZA65_RS05020	0.14	+1.4
1,035,362	+	DZA65_RS05020	0.14	+1.4
1,035,362	+	DZA65_RS05020	0.14	-0.6
1,035,362	+	DZA65_RS05020	0.14	-1.1
1,035,362	+	DZA65_RS05020	0.14	-0.7
1,035,363	-	DZA65_RS05020	0.14	+0.5
1,035,363	-	DZA65_RS05020	0.14	-0.5
1,035,363	-	DZA65_RS05020	0.14	-0.9
1,035,363	-	DZA65_RS05020	0.14	-1.9
1,035,363	-	DZA65_RS05020	0.14	-2.3
1,035,363	-	DZA65_RS05020	0.14	-1.5
1,035,363	-	DZA65_RS05020	0.14	-3.3
1,035,363	-	DZA65_RS05020	0.14	+1.1
1,035,363	-	DZA65_RS05020	0.14	-0.5
1,035,363	-	DZA65_RS05020	0.14	-0.5
1,035,363	-	DZA65_RS05020	0.14	-1.1
1,035,363	-	DZA65_RS05020	0.14	-0.9
1,035,363	-	DZA65_RS05020	0.14	-0.5
1,035,363	-			-0.8
1,035,363	-	DZA65_RS05020	0.14	+0.7
1,035,363	-	DZA65_RS05020	0.14	+1.1
1,035,364	+	DZA65_RS05020	0.14	+0.1
1,035,364	+	DZA65_RS05020	0.14	+2.1
1,035,364	+	DZA65_RS05020	0.14	+0.5
1,035,364	+	DZA65_RS05020	0.14	-0.3
1,035,364	+	DZA65_RS05020	0.14	-0.3
1,035,364	+	DZA65_RS05020	0.14	-0.8
1,035,364	+	DZA65_RS05020	0.14	-1.5
1,035,364	+	DZA65_RS05020	0.14	+0.1
1,035,365	-	DZA65_RS05020	0.15	-0.6
1,035,365	-	DZA65_RS05020	0.15	+2.1
1,035,365	-	DZA65_RS05020	0.15	-2.3
1,035,365	-	DZA65_RS05020	0.15	-0.9
1,035,365	-	DZA65_RS05020	0.15	-1.8
1,035,365	-	DZA65_RS05020	0.15	-2.5
1,035,374	-	DZA65_RS05020	0.17	-1.4
1,035,465	+	DZA65_RS05020	0.42	+0.3
1,035,465	+	DZA65_RS05020	0.42	-0.9
1,035,465	+	DZA65_RS05020	0.42	-0.5
1,035,466	-	DZA65_RS05020	0.42	-1.1
1,035,478	+	DZA65_RS05020	0.45	+0.4
1,035,478	+	DZA65_RS05020	0.45	-0.8
1,035,478	+	DZA65_RS05020	0.45	-0.8
1,035,478	+	DZA65_RS05020	0.45	+1.1
1,035,478	+	DZA65_RS05020	0.45	+0.5
1,035,479	-	DZA65_RS05020	0.46	+0.1
1,035,479	-	DZA65_RS05020	0.46	+0.1
1,035,521	+	DZA65_RS05020	0.57	-0.6
1,035,521	+	DZA65_RS05020	0.57	+0.8
1,035,521	+	DZA65_RS05020	0.57	+0.5
1,035,521	+	DZA65_RS05020	0.57	+1.1
1,035,521	+	DZA65_RS05020	0.57	+1.5
1,035,522	-	DZA65_RS05020	0.57	-1.4
1,035,522	-	DZA65_RS05020	0.57	-0.9
1,035,533	+	DZA65_RS05020	0.60	+0.9
1,035,533	+	DZA65_RS05020	0.60	-0.5
1,035,557	+	DZA65_RS05020	0.67	-2.1
1,035,557	+	DZA65_RS05020	0.67	+0.1
1,035,557	+	DZA65_RS05020	0.67	-1.9
1,035,557	+	DZA65_RS05020	0.67	-0.9
1,035,557	+	DZA65_RS05020	0.67	-0.5
1,035,557	+	DZA65_RS05020	0.67	+0.1
1,035,557	+	DZA65_RS05020	0.67	-2.1
1,035,557	+	DZA65_RS05020	0.67	-1.8
1,035,557	+	DZA65_RS05020	0.67	-0.4
1,035,557	+	DZA65_RS05020	0.67	-0.9
1,035,557	+	DZA65_RS05020	0.67	-0.9
1,035,557	+	DZA65_RS05020	0.67	-1.3
1,035,557	+	DZA65_RS05020	0.67	+0.1
1,035,557	+	DZA65_RS05020	0.67	+1.4
1,035,557	+	DZA65_RS05020	0.67	-0.5
1,035,557	+	DZA65_RS05020	0.67	-1.3
1,035,557	+	DZA65_RS05020	0.67	-0.5
1,035,557	+	DZA65_RS05020	0.67	+0.8
1,035,557	+	DZA65_RS05020	0.67	-0.9
1,035,557	+	DZA65_RS05020	0.67	-1.0
1,035,557	+	DZA65_RS05020	0.67	-1.0
1,035,557	+	DZA65_RS05020	0.67	+2.6
1,035,557	+	DZA65_RS05020	0.67	-0.9
1,035,557	+	DZA65_RS05020	0.67	+0.1
1,035,557	+	DZA65_RS05020	0.67	+0.6
1,035,558	-	DZA65_RS05020	0.67	-1.0
1,035,558	-	DZA65_RS05020	0.67	+0.1
1,035,558	-	DZA65_RS05020	0.67	-1.2
1,035,558	-	DZA65_RS05020	0.67	+0.1
1,035,558	-	DZA65_RS05020	0.67	-0.7
1,035,558	-	DZA65_RS05020	0.67	+0.5
1,035,558	-	DZA65_RS05020	0.67	-0.3
1,035,558	-	DZA65_RS05020	0.67	+0.2
1,035,558	-	DZA65_RS05020	0.67	-0.6
1,035,558	-	DZA65_RS05020	0.67	-1.8
1,035,558	-	DZA65_RS05020	0.67	-0.9
1,035,558	-	DZA65_RS05020	0.67	+0.2
1,035,558	-	DZA65_RS05020	0.67	-1.2
1,035,558	-	DZA65_RS05020	0.67	+0.1
1,035,558	-	DZA65_RS05020	0.67	+0.1
1,035,558	-	DZA65_RS05020	0.67	-0.5
1,035,558	-	DZA65_RS05020	0.67	-0.5
1,035,558	-	DZA65_RS05020	0.67	+0.1
1,035,558	-	DZA65_RS05020	0.67	-0.3
1,035,558	-	DZA65_RS05020	0.67	-0.5
1,035,558	-	DZA65_RS05020	0.67	-1.2
1,035,558	-	DZA65_RS05020	0.67	+0.7
1,035,558	-	DZA65_RS05020	0.67	+0.6
1,035,558	-	DZA65_RS05020	0.67	-0.5
1,035,558	-	DZA65_RS05020	0.67	-0.8
1,035,559	+	DZA65_RS05020	0.67	-0.4
1,035,559	+	DZA65_RS05020	0.67	-0.8
1,035,559	+	DZA65_RS05020	0.67	+0.1
1,035,560	-	DZA65_RS05020	0.67	+0.2
1,035,560	-	DZA65_RS05020	0.67	+0.6
1,035,661	+			+0.1
1,035,661	+			-0.7
1,035,661	+			+1.4
1,035,696	+			-1.9
1,035,725	+			-0.6
1,035,725	+			-1.1
1,035,725	+			+0.6
1,035,725	+			-0.1
1,035,725	+			+1.5
1,035,725	+			+0.5
1,035,725	+			-0.4
1,035,725	+			+0.1
1,035,725	+			-1.9
1,035,725	+			-0.1
1,035,725	+			-1.8
1,035,725	+			-2.1
1,035,725	+			+0.1
1,035,726	-			-3.0
1,035,726	-			+0.5
1,035,726	-			-2.0
1,035,726	-			+0.4
1,035,726	-			+0.2
1,035,726	-			-0.3
1,035,726	-			-2.6
1,035,726	-			-2.5
1,035,726	-			-1.8
1,035,744	+			-0.2
1,035,745	-			-0.3
1,035,833	+	DZA65_RS05025	0.23	-0.9
1,035,834	-	DZA65_RS05025	0.23	-1.3
1,035,834	-	DZA65_RS05025	0.23	+0.7
1,035,834	-	DZA65_RS05025	0.23	-1.5
1,035,834	-	DZA65_RS05025	0.23	+0.1
1,035,867	-	DZA65_RS05025	0.28	-3.2
1,035,883	+	DZA65_RS05025	0.30	-1.6
1,035,883	+	DZA65_RS05025	0.30	-0.9
1,035,884	-	DZA65_RS05025	0.31	+0.1
1,035,884	-	DZA65_RS05025	0.31	-0.5
1,035,898	+	DZA65_RS05025	0.33	-0.8
1,035,946	+	DZA65_RS05025	0.40	+0.5
1,035,946	+	DZA65_RS05025	0.40	-2.3
1,035,968	+	DZA65_RS05025	0.43	-0.7
1,035,968	+	DZA65_RS05025	0.43	+0.6
1,035,968	+	DZA65_RS05025	0.43	+0.8
1,035,969	-	DZA65_RS05025	0.43	+0.1
1,035,969	-	DZA65_RS05025	0.43	-0.9
1,035,969	-	DZA65_RS05025	0.43	-0.8
1,036,032	+	DZA65_RS05025	0.53	-0.5
1,036,066	+	DZA65_RS05025	0.58	-1.9
1,036,066	+	DZA65_RS05025	0.58	+3.1
1,036,066	+	DZA65_RS05025	0.58	-2.8
1,036,066	+	DZA65_RS05025	0.58	+1.1
1,036,066	+	DZA65_RS05025	0.58	-2.6
1,036,066	+	DZA65_RS05025	0.58	-2.9
1,036,066	+	DZA65_RS05025	0.58	-1.5
1,036,066	+	DZA65_RS05025	0.58	+0.5
1,036,066	+	DZA65_RS05025	0.58	-0.3
1,036,067	-	DZA65_RS05025	0.58	-0.3
1,036,067	-	DZA65_RS05025	0.58	-0.7
1,036,067	-	DZA65_RS05025	0.58	-1.3
1,036,087	+	DZA65_RS05025	0.61	-2.3
1,036,087	+	DZA65_RS05025	0.61	+1.5
1,036,088	-	DZA65_RS05025	0.62	-2.0
1,036,088	-	DZA65_RS05025	0.62	-1.1
1,036,089	+	DZA65_RS05025	0.62	-1.6
1,036,089	+	DZA65_RS05025	0.62	+0.4
1,036,089	+	DZA65_RS05025	0.62	-2.1
1,036,089	+	DZA65_RS05025	0.62	-1.5
1,036,089	+	DZA65_RS05025	0.62	-0.8
1,036,090	-	DZA65_RS05025	0.62	-2.1
1,036,090	-	DZA65_RS05025	0.62	+0.8
1,036,090	-	DZA65_RS05025	0.62	-1.9
1,036,090	-	DZA65_RS05025	0.62	-0.1
1,036,090	-	DZA65_RS05025	0.62	+0.8
1,036,090	-	DZA65_RS05025	0.62	-1.1
1,036,090	-	DZA65_RS05025	0.62	+0.2
1,036,105	-	DZA65_RS05025	0.64	+0.7
1,036,133	+	DZA65_RS05025	0.68	-1.1
1,036,133	+	DZA65_RS05025	0.68	+1.1
1,036,133	+			+1.1
1,036,133	+	DZA65_RS05025	0.68	-1.3
1,036,134	-	DZA65_RS05025	0.68	-0.9
1,036,134	-	DZA65_RS05025	0.68	+0.2
1,036,134	-	DZA65_RS05025	0.68	-0.5
1,036,159	+	DZA65_RS05025	0.72	-0.6
1,036,159	+	DZA65_RS05025	0.72	-2.6
1,036,160	-	DZA65_RS05025	0.72	-0.5
1,036,160	-	DZA65_RS05025	0.72	-2.5
1,036,160	-	DZA65_RS05025	0.72	+1.1
1,036,162	+	DZA65_RS05025	0.73	+2.4
1,036,162	+	DZA65_RS05025	0.73	-1.5
1,036,163	-	DZA65_RS05025	0.73	-0.5
1,036,163	-	DZA65_RS05025	0.73	+0.3
1,036,211	+	DZA65_RS05025	0.80	+0.5
1,036,211	+	DZA65_RS05025	0.80	-1.4
1,036,212	-	DZA65_RS05025	0.80	-1.5
1,036,239	+	DZA65_RS05025	0.84	+1.0
1,036,239	+	DZA65_RS05025	0.84	-2.2
1,036,240	-	DZA65_RS05025	0.85	+0.6
1,036,240	-	DZA65_RS05025	0.85	+0.7
1,036,267	+	DZA65_RS05025	0.89	+2.5
1,036,332	-			-2.6
1,036,355	+			+0.3
1,036,355	+			-2.1
1,036,355	+			-0.7
1,036,355	+			+0.5
1,036,355	+			-0.1
1,036,355	+			-0.0
1,036,355	+			-0.9
1,036,355	+			+0.7
1,036,355	+			-1.9
1,036,355	+			-0.2
1,036,355	+			-1.3
1,036,356	-			-0.8
1,036,356	-			-0.3
1,036,356	-			+0.1
1,036,356	-			-1.6
1,036,356	-			-1.8
1,036,438	+	DZA65_RS05030	0.11	-1.3
1,036,551	+	DZA65_RS05030	0.23	+0.2
1,036,552	-	DZA65_RS05030	0.24	+0.5
1,036,552	-	DZA65_RS05030	0.24	+0.9
1,036,552	-	DZA65_RS05030	0.24	+0.7
1,036,552	-	DZA65_RS05030	0.24	+0.5
1,036,552	-	DZA65_RS05030	0.24	-0.9

Or see this region's nucleotide sequence