Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04120

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04115 and DZA65_RS04120 overlap by 4 nucleotidesDZA65_RS04120 and DZA65_RS04125 are separated by 8 nucleotidesDZA65_RS04125 and DZA65_RS04130 overlap by 14 nucleotidesDZA65_RS04130 and DZA65_RS04135 overlap by 1 nucleotides DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562 _RS04115 DZA65_RS04120: DZA65_RS04120 - DUF2597 family protein, at 868,559 to 869,014 _RS04120 DZA65_RS04125: DZA65_RS04125 - holin, at 869,023 to 869,328 _RS04125 DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656 _RS04130 DZA65_RS04135: DZA65_RS04135 - hypothetical protein, at 869,656 to 870,012 _RS04135 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1 2 3at 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.895 kb on + strand, within DZA65_RS04115at 867.895 kb on + strand, within DZA65_RS04115at 867.909 kb on - strand, within DZA65_RS04115at 867.913 kb on + strand, within DZA65_RS04115at 868.051 kb on + strand, within DZA65_RS04115at 868.076 kb on - strand, within DZA65_RS04115at 868.076 kb on - strand, within DZA65_RS04115at 868.141 kb on - strand, within DZA65_RS04115at 868.158 kb on + strand, within DZA65_RS04115at 868.168 kb on - strand, within DZA65_RS04115at 868.176 kb on + strand, within DZA65_RS04115at 868.177 kb on - strand, within DZA65_RS04115at 868.177 kb on - strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.222 kb on - strand, within DZA65_RS04115at 868.316 kb on + strand, within DZA65_RS04115at 868.317 kb on - strand, within DZA65_RS04115at 868.317 kb on - strand, within DZA65_RS04115at 868.347 kb on + strand, within DZA65_RS04115at 868.348 kb on - strand, within DZA65_RS04115at 868.480 kb on - strandat 868.480 kb on - strandat 868.493 kb on + strandat 868.494 kb on - strandat 868.497 kb on + strandat 868.497 kb on + strandat 868.497 kb on + strandat 868.498 kb on - strandat 868.498 kb on - strandat 868.498 kb on - strandat 868.498 kb on - strandat 868.498 kb on - strandat 868.498 kb on - strandat 868.538 kb on + strandat 868.538 kb on + strandat 868.538 kb on + strandat 868.538 kb on + strandat 868.538 kb on + strandat 868.539 kb on - strandat 868.539 kb on - strandat 868.539 kb on - strandat 868.539 kb on - strandat 868.640 kb on - strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.728 kb on + strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strandat 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.729 kb on - strand, within DZA65_RS04120at 868.732 kb on + strand, within DZA65_RS04120at 868.732 kb on + strand, within DZA65_RS04120at 868.732 kb on + strand, within DZA65_RS04120at 868.732 kb on + strand, within DZA65_RS04120at 868.733 kb on - strand, within DZA65_RS04120at 868.733 kb on - strand, within DZA65_RS04120at 868.814 kb on + strand, within DZA65_RS04120at 868.815 kb on - strand, within DZA65_RS04120at 868.927 kb on + strand, within DZA65_RS04120at 868.927 kb on + strand, within DZA65_RS04120at 868.927 kb on + strand, within DZA65_RS04120at 868.927 kb on + strand, within DZA65_RS04120at 868.928 kb on - strand, within DZA65_RS04120at 868.928 kb on - strand, within DZA65_RS04120at 868.928 kb on - strand, within DZA65_RS04120at 868.928 kb on - strand, within DZA65_RS04120at 869.054 kb on + strand, within DZA65_RS04125at 869.322 kb on + strandat 869.322 kb on + strandat 869.322 kb on + strandat 869.323 kb on - strandat 869.323 kb on - strandat 869.323 kb on - strandat 869.323 kb on - strandat 869.323 kb on - strandat 869.340 kb on + strandat 869.340 kb on + strandat 869.340 kb on + strandat 869.340 kb on + strandat 869.340 kb on + strandat 869.340 kb on + strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.341 kb on - strandat 869.345 kb on - strandat 869.415 kb on - strand, within DZA65_RS04130at 869.415 kb on - strand, within DZA65_RS04130at 869.479 kb on + strand, within DZA65_RS04130at 869.480 kb on - strand, within DZA65_RS04130at 869.480 kb on - strand, within DZA65_RS04130at 869.525 kb on + strand, within DZA65_RS04130at 869.546 kb on + strand, within DZA65_RS04130at 869.546 kb on + strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.547 kb on - strand, within DZA65_RS04130at 869.564 kb on + strand, within DZA65_RS04130at 869.602 kb on + strand, within DZA65_RS04130at 869.602 kb on + strand, within DZA65_RS04130at 869.630 kb on - strandat 869.630 kb on - strandat 869.649 kb on + strandat 869.650 kb on - strandat 869.667 kb on - strandat 869.667 kb on - strandat 869.798 kb on + strand, within DZA65_RS04135at 869.799 kb on - strand, within DZA65_RS04135at 869.853 kb on - strand, within DZA65_RS04135at 869.868 kb on + strand, within DZA65_RS04135at 869.869 kb on - strand, within DZA65_RS04135at 869.869 kb on - strand, within DZA65_RS04135at 869.869 kb on - strand, within DZA65_RS04135at 869.904 kb on + strand, within DZA65_RS04135at 869.905 kb on - strand, within DZA65_RS04135at 869.941 kb on + strand, within DZA65_RS04135at 869.941 kb on + strand, within DZA65_RS04135at 869.942 kb on - strand, within DZA65_RS04135at 869.942 kb on - strand, within DZA65_RS04135at 869.975 kb on + strand, within DZA65_RS04135at 869.975 kb on + strand, within DZA65_RS04135

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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867,891 + DZA65_RS04115 0.40 -0.3
867,891 + DZA65_RS04115 0.40 -1.0
867,891 + DZA65_RS04115 0.40 +1.0
867,891 + DZA65_RS04115 0.40 -0.7
867,892 - DZA65_RS04115 0.40 +0.9
867,892 - DZA65_RS04115 0.40 -1.0
867,892 - DZA65_RS04115 0.40 -1.9
867,892 - DZA65_RS04115 0.40 +0.4
867,892 - DZA65_RS04115 0.40 +1.1
867,892 - DZA65_RS04115 0.40 +1.6
867,895 + DZA65_RS04115 0.40 -2.5
867,895 + DZA65_RS04115 0.40 +3.1
867,909 - DZA65_RS04115 0.41 -2.5
867,913 + DZA65_RS04115 0.42 -0.6
868,051 + DZA65_RS04115 0.54 +0.3
868,076 - DZA65_RS04115 0.56 +0.1
868,076 - DZA65_RS04115 0.56 -0.5
868,141 - DZA65_RS04115 0.62 +0.8
868,158 + DZA65_RS04115 0.64 -0.7
868,168 - DZA65_RS04115 0.65 +1.1
868,176 + DZA65_RS04115 0.65 +0.1
868,177 - DZA65_RS04115 0.65 +3.6
868,177 - DZA65_RS04115 0.65 -1.7
868,179 + DZA65_RS04115 0.66 -0.9
868,179 + DZA65_RS04115 0.66 +3.1
868,179 + DZA65_RS04115 0.66 +0.4
868,180 - DZA65_RS04115 0.66 +1.1
868,180 - DZA65_RS04115 0.66 +0.1
868,180 - DZA65_RS04115 0.66 -0.4
868,180 - DZA65_RS04115 0.66 +1.1
868,222 - DZA65_RS04115 0.69 +0.1
868,316 + DZA65_RS04115 0.78 -0.9
868,317 - DZA65_RS04115 0.78 -0.9
868,317 - DZA65_RS04115 0.78 -0.3
868,347 + DZA65_RS04115 0.81 +2.3
868,348 - DZA65_RS04115 0.81 +0.5
868,480 - +0.4
868,480 - +1.1
868,493 + -2.5
868,494 - +2.5
868,497 + +1.3
868,497 + +0.5
868,497 + +0.1
868,498 - -1.6
868,498 - -0.2
868,498 - -1.3
868,498 - -0.9
868,498 - -0.3
868,498 - +0.1
868,538 + -2.0
868,538 + -1.5
868,538 + -0.9
868,538 + -0.6
868,538 + -1.3
868,539 - +0.0
868,539 - +0.5
868,539 - -0.5
868,539 - -0.9
868,640 - DZA65_RS04120 0.18 -0.2
868,728 + DZA65_RS04120 0.37 -2.2
868,728 + DZA65_RS04120 0.37 -0.9
868,728 + DZA65_RS04120 0.37 +0.4
868,728 + DZA65_RS04120 0.37 -0.5
868,728 + DZA65_RS04120 0.37 +0.8
868,728 + DZA65_RS04120 0.37 -0.2
868,728 + DZA65_RS04120 0.37 +1.5
868,728 + DZA65_RS04120 0.37 -1.2
868,728 + DZA65_RS04120 0.37 +0.6
868,728 + DZA65_RS04120 0.37 +1.1
868,728 + DZA65_RS04120 0.37 -1.0
868,728 + DZA65_RS04120 0.37 +0.3
868,728 + DZA65_RS04120 0.37 +0.1
868,728 + DZA65_RS04120 0.37 -1.2
868,728 + DZA65_RS04120 0.37 -0.9
868,729 - DZA65_RS04120 0.37 -0.9
868,729 - DZA65_RS04120 0.37 +0.3
868,729 - DZA65_RS04120 0.37 +0.9
868,729 - DZA65_RS04120 0.37 -0.3
868,729 - DZA65_RS04120 0.37 +0.5
868,729 - DZA65_RS04120 0.37 -1.2
868,729 - -0.5
868,729 - DZA65_RS04120 0.37 +1.3
868,729 - DZA65_RS04120 0.37 +0.5
868,729 - DZA65_RS04120 0.37 -1.1
868,729 - DZA65_RS04120 0.37 -0.1
868,729 - DZA65_RS04120 0.37 +2.1
868,729 - DZA65_RS04120 0.37 -1.1
868,729 - DZA65_RS04120 0.37 +0.9
868,729 - DZA65_RS04120 0.37 -0.1
868,729 - DZA65_RS04120 0.37 +0.0
868,732 + DZA65_RS04120 0.38 +1.6
868,732 + DZA65_RS04120 0.38 -1.0
868,732 + DZA65_RS04120 0.38 -1.1
868,732 + DZA65_RS04120 0.38 -1.2
868,733 - DZA65_RS04120 0.38 +0.2
868,733 - DZA65_RS04120 0.38 -1.1
868,814 + DZA65_RS04120 0.56 +0.1
868,815 - DZA65_RS04120 0.56 +0.5
868,927 + DZA65_RS04120 0.81 +0.7
868,927 + DZA65_RS04120 0.81 +0.8
868,927 + DZA65_RS04120 0.81 -0.5
868,927 + DZA65_RS04120 0.81 +2.1
868,928 - DZA65_RS04120 0.81 -1.2
868,928 - DZA65_RS04120 0.81 -1.5
868,928 - DZA65_RS04120 0.81 +0.5
868,928 - DZA65_RS04120 0.81 -0.2
869,054 + DZA65_RS04125 0.10 -1.7
869,322 + +0.4
869,322 + -2.1
869,322 + -0.1
869,323 - -2.5
869,323 - -0.2
869,323 - -1.2
869,323 - +0.5
869,323 - -0.4
869,340 + -0.3
869,340 + -1.5
869,340 + -1.6
869,340 + -0.2
869,340 + -0.6
869,340 + +0.4
869,341 - +2.2
869,341 - +1.0
869,341 - -2.7
869,341 - -1.1
869,341 - -0.6
869,341 - +1.1
869,341 - -1.9
869,341 - +0.8
869,341 - +2.4
869,345 - -0.6
869,415 - DZA65_RS04130 0.29 +0.8
869,415 - DZA65_RS04130 0.29 -1.9
869,479 + DZA65_RS04130 0.48 -0.3
869,480 - DZA65_RS04130 0.48 -0.9
869,480 - DZA65_RS04130 0.48 -1.1
869,525 + DZA65_RS04130 0.61 -0.5
869,546 + DZA65_RS04130 0.68 -1.5
869,546 + DZA65_RS04130 0.68 -0.1
869,547 - DZA65_RS04130 0.68 -0.5
869,547 - DZA65_RS04130 0.68 -0.5
869,547 - DZA65_RS04130 0.68 +0.4
869,547 - DZA65_RS04130 0.68 -2.1
869,547 - DZA65_RS04130 0.68 +0.8
869,547 - DZA65_RS04130 0.68 -1.6
869,547 - DZA65_RS04130 0.68 -1.2
869,564 + DZA65_RS04130 0.73 +1.0
869,602 + DZA65_RS04130 0.84 -0.3
869,602 + DZA65_RS04130 0.84 +0.1
869,630 - +0.0
869,630 - +0.6
869,649 + -1.5
869,650 - -1.8
869,667 - +1.7
869,667 - -1.1
869,798 + DZA65_RS04135 0.40 +0.8
869,799 - DZA65_RS04135 0.40 +0.4
869,853 - DZA65_RS04135 0.55 -0.2
869,868 + DZA65_RS04135 0.59 +2.3
869,869 - DZA65_RS04135 0.60 +1.0
869,869 - DZA65_RS04135 0.60 -0.9
869,869 - DZA65_RS04135 0.60 +1.4
869,904 + DZA65_RS04135 0.69 +0.1
869,905 - DZA65_RS04135 0.70 +0.1
869,941 + DZA65_RS04135 0.80 +1.2
869,941 + DZA65_RS04135 0.80 -0.6
869,942 - DZA65_RS04135 0.80 -0.7
869,942 - DZA65_RS04135 0.80 -0.1
869,975 + DZA65_RS04135 0.89 +1.7
869,975 + DZA65_RS04135 0.89 +0.9

Or see this region's nucleotide sequence