Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03250

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03245 and DZA65_RS03250 are separated by 108 nucleotidesDZA65_RS03250 and DZA65_RS03255 are separated by 250 nucleotides DZA65_RS03245: DZA65_RS03245 - tRNA pseudouridine(55) synthase TruB, at 688,020 to 688,976 _RS03245 DZA65_RS03250: DZA65_RS03250 - 30S ribosomal protein S15, at 689,085 to 689,354 _RS03250 DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725 _RS03255 Position (kb) 689 690Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 688.114 kb on + strandat 688.114 kb on + strandat 688.149 kb on - strand, within DZA65_RS03245at 688.221 kb on + strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.239 kb on - strand, within DZA65_RS03245at 688.280 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.299 kb on - strand, within DZA65_RS03245at 688.299 kb on - strand, within DZA65_RS03245at 688.321 kb on + strandat 688.395 kb on + strand, within DZA65_RS03245at 688.395 kb on + strand, within DZA65_RS03245at 688.395 kb on + strand, within DZA65_RS03245at 688.396 kb on - strand, within DZA65_RS03245at 688.411 kb on - strand, within DZA65_RS03245at 688.428 kb on + strand, within DZA65_RS03245at 688.429 kb on - strand, within DZA65_RS03245at 688.434 kb on + strand, within DZA65_RS03245at 688.435 kb on - strand, within DZA65_RS03245at 688.435 kb on - strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.500 kb on - strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.569 kb on - strand, within DZA65_RS03245at 688.569 kb on - strand, within DZA65_RS03245at 688.614 kb on + strand, within DZA65_RS03245at 688.615 kb on - strand, within DZA65_RS03245at 688.615 kb on - strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.642 kb on - strand, within DZA65_RS03245at 688.782 kb on - strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.817 kb on - strand, within DZA65_RS03245at 688.817 kb on - strand, within DZA65_RS03245at 688.841 kb on + strand, within DZA65_RS03245at 688.842 kb on - strand, within DZA65_RS03245at 688.945 kb on + strandat 688.946 kb on - strandat 689.059 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.454 kb on + strandat 689.457 kb on + strandat 689.488 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.532 kb on - strandat 689.550 kb on + strandat 689.564 kb on + strandat 689.573 kb on + strandat 689.573 kb on + strandat 689.602 kb on - strandat 689.647 kb on - strandat 689.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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688,114 + +0.1
688,114 + +1.9
688,149 - DZA65_RS03245 0.13 -0.9
688,221 + DZA65_RS03245 0.21 +0.4
688,222 - DZA65_RS03245 0.21 -1.5
688,222 - DZA65_RS03245 0.21 -1.2
688,222 - DZA65_RS03245 0.21 -0.1
688,239 - DZA65_RS03245 0.23 +0.2
688,280 + DZA65_RS03245 0.27 -1.7
688,298 + DZA65_RS03245 0.29 -1.3
688,298 + DZA65_RS03245 0.29 -1.5
688,298 + DZA65_RS03245 0.29 +0.6
688,299 - DZA65_RS03245 0.29 -0.3
688,299 - DZA65_RS03245 0.29 -0.5
688,321 + -1.5
688,395 + DZA65_RS03245 0.39 -2.2
688,395 + DZA65_RS03245 0.39 +0.1
688,395 + DZA65_RS03245 0.39 +0.1
688,396 - DZA65_RS03245 0.39 +1.1
688,411 - DZA65_RS03245 0.41 -0.5
688,428 + DZA65_RS03245 0.43 -1.5
688,429 - DZA65_RS03245 0.43 -0.7
688,434 + DZA65_RS03245 0.43 -1.7
688,435 - DZA65_RS03245 0.43 +0.7
688,435 - DZA65_RS03245 0.43 +0.1
688,485 + DZA65_RS03245 0.49 -1.9
688,485 + DZA65_RS03245 0.49 -0.5
688,485 + DZA65_RS03245 0.49 -1.2
688,485 + DZA65_RS03245 0.49 -0.5
688,486 - DZA65_RS03245 0.49 -0.0
688,486 - DZA65_RS03245 0.49 -0.6
688,486 - DZA65_RS03245 0.49 +0.8
688,486 - DZA65_RS03245 0.49 +0.1
688,486 - DZA65_RS03245 0.49 -0.5
688,493 - DZA65_RS03245 0.49 -1.0
688,493 - DZA65_RS03245 0.49 -0.9
688,493 - DZA65_RS03245 0.49 -2.9
688,493 - DZA65_RS03245 0.49 -0.2
688,493 - DZA65_RS03245 0.49 -1.9
688,500 - DZA65_RS03245 0.50 -0.3
688,554 + DZA65_RS03245 0.56 -1.5
688,554 + DZA65_RS03245 0.56 +0.5
688,554 + DZA65_RS03245 0.56 -0.1
688,554 + DZA65_RS03245 0.56 -0.2
688,554 + DZA65_RS03245 0.56 -0.0
688,554 + DZA65_RS03245 0.56 -1.0
688,554 + DZA65_RS03245 0.56 -0.2
688,554 + DZA65_RS03245 0.56 -2.0
688,554 + DZA65_RS03245 0.56 -0.1
688,554 + DZA65_RS03245 0.56 +2.4
688,555 - DZA65_RS03245 0.56 -2.5
688,555 - DZA65_RS03245 0.56 -0.3
688,555 - DZA65_RS03245 0.56 -3.5
688,555 - DZA65_RS03245 0.56 +1.1
688,555 - DZA65_RS03245 0.56 -0.9
688,555 - DZA65_RS03245 0.56 +1.5
688,555 - DZA65_RS03245 0.56 -1.2
688,555 - DZA65_RS03245 0.56 +0.5
688,555 - DZA65_RS03245 0.56 -0.5
688,569 - DZA65_RS03245 0.57 -1.0
688,569 - DZA65_RS03245 0.57 +1.5
688,614 + DZA65_RS03245 0.62 -0.6
688,615 - DZA65_RS03245 0.62 +0.6
688,615 - DZA65_RS03245 0.62 -1.6
688,641 + DZA65_RS03245 0.65 -0.3
688,641 + DZA65_RS03245 0.65 -2.8
688,641 + DZA65_RS03245 0.65 -1.3
688,641 + DZA65_RS03245 0.65 +0.1
688,642 - DZA65_RS03245 0.65 -0.9
688,782 - DZA65_RS03245 0.80 +0.5
688,816 + DZA65_RS03245 0.83 -0.2
688,816 + DZA65_RS03245 0.83 +0.1
688,816 + DZA65_RS03245 0.83 -2.3
688,816 + DZA65_RS03245 0.83 -1.8
688,817 - DZA65_RS03245 0.83 -1.5
688,817 - DZA65_RS03245 0.83 -0.7
688,841 + DZA65_RS03245 0.86 +1.1
688,842 - DZA65_RS03245 0.86 +0.1
688,945 + -0.2
688,946 - -0.8
689,059 + +1.7
689,429 + -3.3
689,429 + +0.1
689,429 + -0.2
689,429 + -0.3
689,429 + +0.4
689,429 + +0.1
689,440 + -1.1
689,440 + -0.8
689,440 + -1.1
689,440 + +1.9
689,444 + -0.9
689,444 + -0.0
689,444 + -0.5
689,444 + +0.1
689,444 + +2.1
689,454 + -2.2
689,457 + -0.6
689,488 + -0.6
689,531 + -0.0
689,531 + -1.2
689,531 + +1.1
689,531 + -0.3
689,532 - -0.9
689,550 + -1.6
689,564 + +0.1
689,573 + +0.5
689,573 + -2.5
689,602 - +1.4
689,647 - -0.5
689,791 + -1.5

Or see this region's nucleotide sequence