Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00350

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Norland
				remove
83,034	+			-0.3
83,035	-			-0.5
83,039	+			+0.4
83,053	+			-0.8
83,053	+			-0.8
83,053	+			-0.5
83,054	-			+1.2
83,092	+			-0.0
83,092	+			+0.1
83,093	-			-0.8
83,093	-			-1.1
83,096	+			-0.3
83,096	+			-1.8
83,096	+			-0.5
83,096	+			+0.5
83,096	+			+0.1
83,097	-			-0.7
83,097	-			-0.3
83,097	-			+0.7
83,210	+	DZA65_RS00345	0.13	+0.1
83,210	+	DZA65_RS00345	0.13	-0.8
83,210	+	DZA65_RS00345	0.13	-0.9
83,210	+	DZA65_RS00345	0.13	+0.7
83,210	+	DZA65_RS00345	0.13	-0.1
83,211	-	DZA65_RS00345	0.13	+1.6
83,211	-	DZA65_RS00345	0.13	+0.8
83,211	-	DZA65_RS00345	0.13	-0.6
83,211	-	DZA65_RS00345	0.13	-0.1
83,211	-	DZA65_RS00345	0.13	-0.8
83,211	-	DZA65_RS00345	0.13	-0.8
83,211	-	DZA65_RS00345	0.13	-1.1
83,211	-	DZA65_RS00345	0.13	-0.6
83,226	-	DZA65_RS00345	0.14	-0.3
83,292	-	DZA65_RS00345	0.22	-0.8
83,328	+	DZA65_RS00345	0.26	+1.9
83,328	+	DZA65_RS00345	0.26	+0.0
83,328	+	DZA65_RS00345	0.26	+0.7
83,328	+	DZA65_RS00345	0.26	-0.8
83,328	+	DZA65_RS00345	0.26	-1.3
83,328	+	DZA65_RS00345	0.26	-0.4
83,328	+	DZA65_RS00345	0.26	-1.1
83,329	-	DZA65_RS00345	0.26	+0.2
83,329	-	DZA65_RS00345	0.26	+1.2
83,329	-	DZA65_RS00345	0.26	-3.8
83,329	-	DZA65_RS00345	0.26	-1.4
83,329	-	DZA65_RS00345	0.26	+0.2
83,329	-	DZA65_RS00345	0.26	-0.7
83,426	+	DZA65_RS00345	0.37	+1.0
83,427	-	DZA65_RS00345	0.37	-1.2
83,465	+	DZA65_RS00345	0.41	-1.1
83,465	+	DZA65_RS00345	0.41	-0.3
83,465	+	DZA65_RS00345	0.41	+0.2
83,466	-	DZA65_RS00345	0.41	-1.0
83,552	+	DZA65_RS00345	0.51	+0.2
83,552	+	DZA65_RS00345	0.51	+0.2
83,610	+	DZA65_RS00345	0.57	+0.7
83,610	+	DZA65_RS00345	0.57	+1.2
83,774	+	DZA65_RS00345	0.76	+1.8
83,774	+	DZA65_RS00345	0.76	+0.0
83,775	-	DZA65_RS00345	0.76	+1.4
83,775	-	DZA65_RS00345	0.76	-2.3
83,916	+			-0.2
83,916	+			-0.4
83,916	+			+0.5
83,916	+			+0.0
83,917	-			+0.4
83,942	-			-1.8
83,952	+			+1.8
83,952	+			-1.1
83,952	+			+0.3
83,952	+			-0.1
83,952	+			-1.6
83,952	+			-1.1
83,952	+			-0.6
83,952	+			-0.3
83,952	+			-1.1
83,952	+			-0.8
83,952	+			-0.9
83,952	+			+0.4
83,952	+			-0.8
83,952	+			+1.4
83,952	+			+0.8
83,952	+			-1.6
83,952	+			-0.8
83,952	+			+0.2
83,952	+			-0.8
83,952	+			-0.5
83,952	+			-1.1
83,952	+			+1.2
83,952	+			-0.6
83,952	+			+0.2
83,952	+			-0.8
83,952	+			-1.8
83,952	+			-0.1
83,952	+			+0.2
83,952	+			+0.1
83,952	+			+1.2
83,952	+			-1.1
83,953	-			-0.8
83,953	-			-0.9
83,953	-			-1.8
83,953	-			+0.1
83,953	-			+2.2
83,953	-			-0.6
83,953	-			-0.8
83,953	-			+2.0
83,953	-			-1.7
83,953	-			-0.8
83,953	-			+0.8
83,953	-			+1.4
83,953	-			-1.3
83,953	-			+0.7
83,953	-			-0.1
83,953	-			-1.1
83,953	-			+0.8
83,953	-			-1.9
83,953	-			-3.5
83,953	-			-2.5
83,953	-			+1.8
83,953	-			-1.2
83,953	-			-0.8
83,953	-			-0.8
83,953	-			-2.5
83,953	-			-0.5
83,953	-			-1.7
83,953	-			-1.6
83,953	-			-0.1
83,953	-			-0.8
83,953	-			-0.1
83,954	+			-1.9
83,954	+			-0.3
83,954	+			-0.3
83,954	+			+0.5
83,954	+			-1.3
83,954	+			-1.9
83,954	+			+0.9
83,954	+			+1.5
83,954	+			-0.5
83,954	+			-0.6
83,954	+			+0.1
83,954	+			-1.2
83,954	+			-0.9
83,954	+			-1.1
83,954	+			-1.1
83,954	+			+0.7
83,955	-			-0.3
83,955	-			+0.7
83,955	-			+2.8
83,955	-			-1.0
83,955	-			-1.8
83,955	-			-0.2
83,955	-			-0.8
83,955	-			-1.3
83,955	-			-1.3
83,955	-			+0.3
83,955	-			-0.4
83,955	-			-2.1
83,955	-			-2.1
83,955	-			-1.3
83,988	+			+1.2
83,988	+			-0.3
84,003	-			+1.1
84,003	-			-0.9
84,004	+			-0.6
84,005	-			-2.3
84,009	+			+2.5
84,010	-			-1.8
84,010	-			-0.6
84,015	+			-0.8
84,016	-			-1.1
84,017	+			-1.3
84,017	+			+0.8
84,017	+			+0.7
84,017	+			-2.5
84,017	+			-1.3
84,018	-			-2.3
84,018	-			+0.6
84,018	-			-1.0
84,018	-			+0.4
84,018	-			-0.6
84,171	-	DZA65_RS00350	0.86	-1.1
84,175	-	DZA65_RS00350	0.88	-1.2
84,175	-	DZA65_RS00350	0.88	-0.9
84,175	-	DZA65_RS00350	0.88	-1.1
84,258	+			-1.3
84,278	+			-0.8
84,278	+			-3.1
84,278	+			+0.9
84,279	-			+1.2
84,279	-			-1.6
84,310	+			-1.6
84,313	+			-1.1
84,313	+			-0.6
84,313	+			-2.2
84,313	+			-0.5
84,313	+			-0.3
84,313	+			-0.8
84,313	+			-1.1
84,313	+			-0.8
84,314	-			-2.5
84,314	-			-0.2
84,314	-			-0.6
84,314	-			-3.6
84,314	-			-1.0
84,314	-			-1.9
84,314	-			+0.2
84,314	-			-1.1
84,314	-			-1.1
84,317	+			-1.9
84,317	+			+0.2
84,317	+			-0.3
84,317	+			-0.3
84,317	+			-1.7
84,317	+			-2.3
84,317	+			-0.3
84,317	+			-1.9
84,318	-			-2.6
84,318	-			-2.2
84,318	-			-1.3
84,318	-			+0.5
84,432	+			-0.9
84,432	+			-0.4
84,432	+			-0.3
84,433	-			-1.5
84,433	-			+1.2
84,433	-			-2.9
84,433	-			+0.2
84,438	+			-2.8
84,438	+			-2.5
84,438	+			-0.0
84,438	+			-0.3
84,438	+			-0.3
84,438	+			-1.3
84,439	-			-0.3
84,439	-			-1.1
84,439	-			-2.2
84,439	-			-3.7
84,439	-			+0.9
84,439	-			-3.7
84,439	-			-1.8
84,439	-			-0.8
84,439	-			-3.3
84,440	+			-0.5
84,474	+	DZA65_RS00355	0.12	-1.5
84,474	+	DZA65_RS00355	0.12	-3.8
84,475	-	DZA65_RS00355	0.12	-0.2
84,475	-	DZA65_RS00355	0.12	+0.4
84,475	-	DZA65_RS00355	0.12	-2.8
84,590	+	DZA65_RS00355	0.20	+0.7
84,612	+	DZA65_RS00355	0.22	-0.1
84,612	+	DZA65_RS00355	0.22	-0.3
84,612	+	DZA65_RS00355	0.22	-1.3
84,612	+	DZA65_RS00355	0.22	-1.3
84,612	+	DZA65_RS00355	0.22	-0.2
84,613	-	DZA65_RS00355	0.22	-2.7
84,613	-	DZA65_RS00355	0.22	-1.3
84,613	-	DZA65_RS00355	0.22	-1.6
84,613	-	DZA65_RS00355	0.22	+0.1
84,613	-	DZA65_RS00355	0.22	-2.1
84,613	-	DZA65_RS00355	0.22	-0.9
84,613	-	DZA65_RS00355	0.22	-2.3
84,613	-	DZA65_RS00355	0.22	-2.2
84,613	-	DZA65_RS00355	0.22	-0.3
84,613	-	DZA65_RS00355	0.22	-0.1
84,687	-	DZA65_RS00355	0.27	-0.8
84,689	+	DZA65_RS00355	0.27	-0.6
84,689	+	DZA65_RS00355	0.27	-2.5
84,689	+	DZA65_RS00355	0.27	+0.6
84,689	+	DZA65_RS00355	0.27	-1.1
84,689	+	DZA65_RS00355	0.27	-2.1
84,689	+	DZA65_RS00355	0.27	-0.5
84,689	+			-1.8
84,690	-	DZA65_RS00355	0.28	+1.2
84,690	-	DZA65_RS00355	0.28	-1.0
84,690	-	DZA65_RS00355	0.28	+0.6
84,690	-	DZA65_RS00355	0.28	-1.1
84,690	-	DZA65_RS00355	0.28	+0.7
84,690	-	DZA65_RS00355	0.28	-1.4
84,690	-	DZA65_RS00355	0.28	-3.0
84,711	+	DZA65_RS00355	0.29	+0.0
84,711	+	DZA65_RS00355	0.29	-2.0
84,711	+	DZA65_RS00355	0.29	-0.8
84,711	+	DZA65_RS00355	0.29	-2.1
84,711	+	DZA65_RS00355	0.29	+1.2
84,711	+	DZA65_RS00355	0.29	-2.6
84,711	+	DZA65_RS00355	0.29	+1.2
84,711	+	DZA65_RS00355	0.29	-1.8
84,712	-	DZA65_RS00355	0.29	-2.2
84,712	-	DZA65_RS00355	0.29	-0.6
84,712	-	DZA65_RS00355	0.29	-0.6
84,712	-	DZA65_RS00355	0.29	+0.2
84,712	-	DZA65_RS00355	0.29	-1.1
84,712	-	DZA65_RS00355	0.29	-1.6
84,712	-	DZA65_RS00355	0.29	-0.2
84,712	-	DZA65_RS00355	0.29	-1.6
84,712	-	DZA65_RS00355	0.29	-0.8
84,712	-	DZA65_RS00355	0.29	-2.7
84,739	-	DZA65_RS00355	0.31	-1.8
84,777	+	DZA65_RS00355	0.34	-0.9
84,777	+	DZA65_RS00355	0.34	-0.3
84,777	+	DZA65_RS00355	0.34	-2.5
84,777	+	DZA65_RS00355	0.34	-0.8
84,777	+	DZA65_RS00355	0.34	+1.8
84,888	+	DZA65_RS00355	0.42	+0.2
84,888	+	DZA65_RS00355	0.42	-1.1
84,888	+	DZA65_RS00355	0.42	-1.3
84,888	+	DZA65_RS00355	0.42	-1.6
84,888	+	DZA65_RS00355	0.42	-2.6
84,888	+	DZA65_RS00355	0.42	-0.1
84,889	-	DZA65_RS00355	0.42	+0.2
84,889	-	DZA65_RS00355	0.42	-1.5
84,889	-	DZA65_RS00355	0.42	-1.8
84,889	-	DZA65_RS00355	0.42	-1.3
84,889	-	DZA65_RS00355	0.42	-0.8
84,894	-	DZA65_RS00355	0.43	-2.1
84,987	-	DZA65_RS00355	0.50	-2.8
84,987	-	DZA65_RS00355	0.50	-1.2
85,109	+	DZA65_RS00355	0.59	-0.8
85,109	+	DZA65_RS00355	0.59	-2.0
85,110	-	DZA65_RS00355	0.59	-1.8
85,110	-	DZA65_RS00355	0.59	-1.6
85,163	+	DZA65_RS00355	0.63	-2.2
85,164	-	DZA65_RS00355	0.63	-1.2
85,164	-	DZA65_RS00355	0.63	-1.8
85,191	+	DZA65_RS00355	0.65	-1.0
85,191	+	DZA65_RS00355	0.65	-0.3
85,191	+	DZA65_RS00355	0.65	-1.3
85,191	+	DZA65_RS00355	0.65	-0.8
85,191	+	DZA65_RS00355	0.65	+0.9
85,191	+	DZA65_RS00355	0.65	-1.1
85,191	+	DZA65_RS00355	0.65	-3.3
85,192	-	DZA65_RS00355	0.65	-2.1
85,192	-	DZA65_RS00355	0.65	-2.5
85,192	-	DZA65_RS00355	0.65	-0.8
85,192	-	DZA65_RS00355	0.65	+0.5
85,192	-	DZA65_RS00355	0.65	+0.2
85,192	-	DZA65_RS00355	0.65	-0.3
85,192	-	DZA65_RS00355	0.65	-1.8
85,192	-	DZA65_RS00355	0.65	-1.3
85,192	-	DZA65_RS00355	0.65	-0.3
85,192	-	DZA65_RS00355	0.65	-1.7
85,192	-	DZA65_RS00355	0.65	-0.8

Or see this region's nucleotide sequence