Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_28105 and lomR are separated by 64 nucleotides lomR and NIAGMN_28115 are separated by 66 nucleotides NIAGMN_28115 and NIAGMN_28120 are separated by 60 nucleotides NIAGMN_28120 and NIAGMN_28125 overlap by 4 nucleotides
NIAGMN_28105: NIAGMN_28105 - Prophage tail fibre N-terminal, at 5,441,360 to 5,444,275
_28105
NIAGMN_28110: lomR - Ail/Lom family protein, at 5,444,340 to 5,444,939
lomR
NIAGMN_28115: NIAGMN_28115 - phage portal protein, at 5,445,006 to 5,448,404
_28115
NIAGMN_28120: NIAGMN_28120 - tail assembly protein, at 5,448,465 to 5,449,037
_28120
NIAGMN_28125: NIAGMN_28125 - phage tail protein, at 5,449,034 to 5,449,777
_28125
Position (kb) 5445
5446
5447
5448
5449 Strain fitness (log2 ratio) -2
-1
0
1 at 5445.912 kb on + strand, within NIAGMN_28115 at 5446.655 kb on - strand, within NIAGMN_28115 at 5446.774 kb on - strand, within NIAGMN_28115 at 5447.681 kb on + strand, within NIAGMN_28115 at 5447.934 kb on - strand, within NIAGMN_28115 at 5447.983 kb on - strand, within NIAGMN_28115 at 5447.983 kb on - strand, within NIAGMN_28115 at 5448.225 kb on - strand at 5448.903 kb on + strand, within NIAGMN_28120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,445,912 + NIAGMN_28115 0.27 -0.1 5,446,655 - NIAGMN_28115 0.49 -2.6 5,446,774 - NIAGMN_28115 0.52 +0.6 5,447,681 + NIAGMN_28115 0.79 -0.4 5,447,934 - NIAGMN_28115 0.86 -0.5 5,447,983 - NIAGMN_28115 0.88 -2.5 5,447,983 - NIAGMN_28115 0.88 +0.6 5,448,225 - -0.8 5,448,903 + NIAGMN_28120 0.76 +0.3
Or see this region's nucleotide sequence