Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcY and NIAGMN_28075 are separated by 497 nucleotides NIAGMN_28075 and yciE are separated by 78 nucleotides yciE and yciE are separated by 36 nucleotides yciE and cotJC are separated by 18 nucleotides
NIAGMN_28070: ybcY - Putative uncharacterized protein YbcY, at 5,437,280 to 5,437,948
ybcY
NIAGMN_28075: NIAGMN_28075 - stress-induced acidophilic repeat motif-containing protein, at 5,438,446 to 5,438,628
_28075
NIAGMN_28080: yciE - Protein YciF, at 5,438,707 to 5,439,207
yciE
NIAGMN_28085: yciE - Protein YciE, at 5,439,244 to 5,439,750
yciE
NIAGMN_28090: cotJC - Mn-containing catalase, at 5,439,769 to 5,440,659
cotJC
Position (kb) 5438
5439
5440 Strain fitness (log2 ratio) -1
0
1 at 5437.921 kb on - strand at 5438.777 kb on + strand, within yciE at 5439.798 kb on + strand at 5439.809 kb on + strand at 5439.909 kb on - strand, within cotJC at 5439.951 kb on - strand, within cotJC at 5439.951 kb on - strand, within cotJC at 5440.096 kb on - strand, within cotJC at 5440.098 kb on - strand, within cotJC at 5440.165 kb on + strand, within cotJC at 5440.177 kb on - strand, within cotJC at 5440.177 kb on - strand, within cotJC at 5440.177 kb on - strand, within cotJC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,437,921 - +0.9 5,438,777 + yciE NIAGMN_28080 0.14 -1.3 5,439,798 + +0.5 5,439,809 + -1.4 5,439,909 - cotJC NIAGMN_28090 0.16 +1.3 5,439,951 - cotJC NIAGMN_28090 0.20 -0.1 5,439,951 - cotJC NIAGMN_28090 0.20 -1.4 5,440,096 - cotJC NIAGMN_28090 0.37 +0.4 5,440,098 - cotJC NIAGMN_28090 0.37 +0.5 5,440,165 + cotJC NIAGMN_28090 0.44 +0.4 5,440,177 - cotJC NIAGMN_28090 0.46 -0.2 5,440,177 - cotJC NIAGMN_28090 0.46 +0.4 5,440,177 - cotJC NIAGMN_28090 0.46 +0.3
Or see this region's nucleotide sequence