Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_27395 and Arg_trna are separated by 523 nucleotides Arg_trna and Ile2_trna are separated by 80 nucleotides Ile2_trna and yhdJ are separated by 40 nucleotides yhdJ and NIAGMN_27425 are separated by 150 nucleotides NIAGMN_27425 and NIAGMN_27430 are separated by 241 nucleotides
NIAGMN_27395: NIAGMN_27395 - DUF1737 domain-containing protein, at 5,317,239 to 5,319,092
_27395
NIAGMN_27410: Arg_trna - tRNA-Arg(tct), at 5,319,616 to 5,319,692
_trna
NIAGMN_27415: Ile2_trna - tRNA-Ile2(cat), at 5,319,773 to 5,319,848
_trna
NIAGMN_27420: yhdJ - DNA adenine methylase, at 5,319,889 to 5,320,947
yhdJ
NIAGMN_27425: NIAGMN_27425 - TrmB family transcriptional regulator, at 5,321,098 to 5,321,295
_27425
NIAGMN_27430: NIAGMN_27430 - DUF1133 domain-containing protein, at 5,321,537 to 5,322,067
_27430
Position (kb) 5319
5320
5321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5319.304 kb on - strand at 5319.334 kb on - strand at 5319.336 kb on - strand at 5319.352 kb on + strand at 5319.418 kb on - strand at 5319.420 kb on - strand at 5319.605 kb on + strand at 5319.840 kb on + strand, within Ile2_trna at 5319.860 kb on - strand at 5319.863 kb on - strand at 5319.876 kb on + strand at 5320.130 kb on + strand, within yhdJ at 5320.191 kb on + strand, within yhdJ at 5320.192 kb on - strand, within yhdJ at 5320.193 kb on + strand, within yhdJ at 5320.194 kb on - strand, within yhdJ at 5320.194 kb on - strand, within yhdJ at 5320.215 kb on - strand, within yhdJ at 5320.235 kb on + strand, within yhdJ at 5320.235 kb on + strand, within yhdJ at 5320.236 kb on - strand, within yhdJ at 5320.236 kb on - strand, within yhdJ at 5320.581 kb on - strand, within yhdJ at 5320.581 kb on - strand, within yhdJ at 5320.781 kb on + strand, within yhdJ at 5320.913 kb on - strand at 5321.374 kb on - strand at 5321.406 kb on - strand at 5321.478 kb on - strand at 5321.478 kb on - strand at 5321.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,319,304 - +1.3 5,319,334 - -1.8 5,319,336 - -0.8 5,319,352 + +0.6 5,319,418 - -3.7 5,319,420 - -0.2 5,319,605 + -1.9 5,319,840 + Ile2_trna NIAGMN_27415 0.88 +0.1 5,319,860 - +0.8 5,319,863 - +0.0 5,319,876 + +0.1 5,320,130 + yhdJ NIAGMN_27420 0.23 -0.3 5,320,191 + yhdJ NIAGMN_27420 0.29 -1.5 5,320,192 - yhdJ NIAGMN_27420 0.29 -0.1 5,320,193 + yhdJ NIAGMN_27420 0.29 -0.1 5,320,194 - yhdJ NIAGMN_27420 0.29 -0.8 5,320,194 - yhdJ NIAGMN_27420 0.29 +0.4 5,320,215 - yhdJ NIAGMN_27420 0.31 -0.4 5,320,235 + yhdJ NIAGMN_27420 0.33 -0.2 5,320,235 + yhdJ NIAGMN_27420 0.33 -0.4 5,320,236 - yhdJ NIAGMN_27420 0.33 -0.3 5,320,236 - yhdJ NIAGMN_27420 0.33 -1.3 5,320,581 - yhdJ NIAGMN_27420 0.65 +0.3 5,320,581 - yhdJ NIAGMN_27420 0.65 +0.4 5,320,781 + yhdJ NIAGMN_27420 0.84 +0.1 5,320,913 - +0.8 5,321,374 - -1.6 5,321,406 - +1.8 5,321,478 - -0.0 5,321,478 - +1.3 5,321,565 + +0.8
Or see this region's nucleotide sequence