Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27035

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhdJ and NIAGMN_27030 are separated by 150 nucleotidesNIAGMN_27030 and NIAGMN_27035 are separated by 226 nucleotidesNIAGMN_27035 and rusA overlap by 4 nucleotidesrusA and NIAGMN_27045 are separated by 12 nucleotides NIAGMN_27025: yhdJ - DNA adenine methylase, at 5,259,473 to 5,260,531 yhdJ NIAGMN_27030: NIAGMN_27030 - TrmB family transcriptional regulator, at 5,260,682 to 5,260,879 _27030 NIAGMN_27035: NIAGMN_27035 - antitermination protein, at 5,261,106 to 5,261,927 _27035 NIAGMN_27040: rusA - Endodeoxyribonuclease RusA, at 5,261,924 to 5,262,298 rusA NIAGMN_27045: NIAGMN_27045 - DUF968 domain-containing protein, at 5,262,311 to 5,263,360 _27045 Position (kb) 5261 5262Strain fitness (log2 ratio) -1 0 1at 5261.234 kb on + strand, within NIAGMN_27035at 5262.003 kb on - strand, within rusA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,261,234 + NIAGMN_27035 0.16 -1.7
5,262,003 - rusA NIAGMN_27040 0.21 -1.2

Or see this region's nucleotide sequence