Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26700

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdeR and yciZ are separated by 147 nucleotidesyciZ and yciT are separated by 89 nucleotides NIAGMN_26695: pdeR - cyclic di-GMP phosphodiesterase, at 5,199,063 to 5,201,048 pdeR NIAGMN_26700: yciZ - UPF0509 protein YciZ, at 5,201,196 to 5,201,369 yciZ NIAGMN_26705: yciT - DNA-binding transcriptional regulator YciT, at 5,201,459 to 5,202,208 yciT Position (kb) 5201 5202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5200.207 kb on - strand, within pdeRat 5200.279 kb on - strand, within pdeRat 5200.758 kb on + strand, within pdeRat 5201.097 kb on - strandat 5201.182 kb on + strandat 5201.246 kb on - strand, within yciZat 5201.300 kb on + strand, within yciZat 5201.632 kb on + strand, within yciTat 5201.668 kb on + strand, within yciT

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,200,207 - pdeR NIAGMN_26695 0.58 +0.2
5,200,279 - pdeR NIAGMN_26695 0.61 -0.5
5,200,758 + pdeR NIAGMN_26695 0.85 -0.0
5,201,097 - -2.0
5,201,182 + -0.2
5,201,246 - yciZ NIAGMN_26700 0.29 +0.0
5,201,300 + yciZ NIAGMN_26700 0.60 -0.3
5,201,632 + yciT NIAGMN_26705 0.23 -0.2
5,201,668 + yciT NIAGMN_26705 0.28 +3.2

Or see this region's nucleotide sequence