Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26680

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntacrR and fabI_F203V are separated by 477 nucleotidesfabI_F203V and yciW are separated by 143 nucleotides NIAGMN_26675: acrR - TetR family transcriptional regulator, at 5,193,723 to 5,194,289 acrR NIAGMN_26680: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 5,194,767 to 5,195,555 _F203V NIAGMN_26685: yciW - Uncharacterized protein YciW, at 5,195,699 to 5,196,826 yciW Position (kb) 5194 5195 5196Strain fitness (log2 ratio) -1 0 1 2at 5194.145 kb on - strand, within acrRat 5194.191 kb on - strand, within acrRat 5194.382 kb on + strandat 5194.445 kb on - strandat 5194.447 kb on + strandat 5194.559 kb on + strandat 5194.594 kb on + strandat 5194.649 kb on + strandat 5194.674 kb on + strandat 5194.697 kb on + strandat 5196.009 kb on - strand, within yciWat 5196.012 kb on - strand, within yciWat 5196.089 kb on + strand, within yciWat 5196.328 kb on - strand, within yciWat 5196.510 kb on + strand, within yciW

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
5,194,145 - acrR NIAGMN_26675 0.74 +0.5
5,194,191 - acrR NIAGMN_26675 0.83 +0.0
5,194,382 + -1.0
5,194,445 - +0.8
5,194,447 + +0.8
5,194,559 + +2.2
5,194,594 + +0.8
5,194,649 + -0.4
5,194,674 + -0.1
5,194,697 + -0.3
5,196,009 - yciW NIAGMN_26685 0.27 -0.1
5,196,012 - yciW NIAGMN_26685 0.28 +0.6
5,196,089 + yciW NIAGMN_26685 0.35 -0.4
5,196,328 - yciW NIAGMN_26685 0.56 -1.2
5,196,510 + yciW NIAGMN_26685 0.72 +0.1

Or see this region's nucleotide sequence