Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26660

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaraJ and tolC are separated by 8 nucleotidestolC and adeB are separated by 22 nucleotides NIAGMN_26655: araJ - Bcr/CflA family drug resistance efflux transporter, at 5,186,802 to 5,187,965 araJ NIAGMN_26660: tolC - multidrug transporter, at 5,187,974 to 5,189,347 tolC NIAGMN_26665: adeB - hydrophobe/amphiphile efflux-1 family RND transporter, at 5,189,370 to 5,192,453 adeB Position (kb) 5187 5188 5189 5190Strain fitness (log2 ratio) -2 -1 0 1at 5187.093 kb on + strand, within araJat 5187.291 kb on - strand, within araJat 5187.292 kb on + strand, within araJat 5187.427 kb on - strand, within araJat 5187.447 kb on + strand, within araJat 5188.240 kb on + strand, within tolCat 5188.568 kb on + strand, within tolCat 5189.084 kb on - strand, within tolCat 5189.084 kb on - strand, within tolCat 5189.348 kb on - strandat 5189.712 kb on + strand, within adeBat 5189.713 kb on - strand, within adeBat 5190.285 kb on - strand, within adeB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,187,093 + araJ NIAGMN_26655 0.25 -1.9
5,187,291 - araJ NIAGMN_26655 0.42 -0.3
5,187,292 + araJ NIAGMN_26655 0.42 +0.4
5,187,427 - araJ NIAGMN_26655 0.54 +0.2
5,187,447 + araJ NIAGMN_26655 0.55 +1.3
5,188,240 + tolC NIAGMN_26660 0.19 +0.1
5,188,568 + tolC NIAGMN_26660 0.43 -0.5
5,189,084 - tolC NIAGMN_26660 0.81 -0.3
5,189,084 - tolC NIAGMN_26660 0.81 +0.2
5,189,348 - -0.5
5,189,712 + adeB NIAGMN_26665 0.11 -0.4
5,189,713 - adeB NIAGMN_26665 0.11 +1.3
5,190,285 - adeB NIAGMN_26665 0.30 +0.4

Or see this region's nucleotide sequence