Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26385

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntabgB and NIAGMN_26385 are separated by 36 nucleotidesNIAGMN_26385 and tnp-IS3 are separated by 25 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides NIAGMN_26380: abgB - p-aminobenzoyl-glutamate hydrolase subunit AbgB, at 5,133,784 to 5,135,229 abgB NIAGMN_26385: NIAGMN_26385 - Pump protein disrupted by IS629, at 5,135,266 to 5,136,063 _26385 NIAGMN_26390: tnp-IS3 - IS3 family transposase, at 5,136,089 to 5,136,415 tnp-IS3 NIAGMN_26395: tnp-IS3 - IS3 family transposase, at 5,136,415 to 5,137,302 tnp-IS3 Position (kb) 5135 5136 5137Strain fitness (log2 ratio) -2 -1 0 1at 5134.425 kb on - strand, within abgBat 5134.552 kb on + strand, within abgBat 5134.701 kb on - strand, within abgBat 5134.715 kb on - strand, within abgBat 5134.715 kb on - strand, within abgBat 5134.794 kb on + strand, within abgBat 5135.018 kb on + strand, within abgBat 5135.023 kb on - strand, within abgBat 5135.055 kb on + strand, within abgBat 5135.056 kb on - strand, within abgBat 5135.272 kb on - strandat 5135.272 kb on - strandat 5135.365 kb on - strand, within NIAGMN_26385at 5135.499 kb on - strand, within NIAGMN_26385at 5135.647 kb on + strand, within NIAGMN_26385at 5135.650 kb on - strand, within NIAGMN_26385at 5135.786 kb on + strand, within NIAGMN_26385at 5135.786 kb on + strand, within NIAGMN_26385at 5135.934 kb on - strand, within NIAGMN_26385

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,134,425 - abgB NIAGMN_26380 0.44 -1.4
5,134,552 + abgB NIAGMN_26380 0.53 -0.6
5,134,701 - abgB NIAGMN_26380 0.63 +1.0
5,134,715 - abgB NIAGMN_26380 0.64 +1.6
5,134,715 - abgB NIAGMN_26380 0.64 +0.7
5,134,794 + abgB NIAGMN_26380 0.70 -0.2
5,135,018 + abgB NIAGMN_26380 0.85 +0.6
5,135,023 - abgB NIAGMN_26380 0.86 -0.0
5,135,055 + abgB NIAGMN_26380 0.88 +0.1
5,135,056 - abgB NIAGMN_26380 0.88 +0.8
5,135,272 - +1.4
5,135,272 - -0.8
5,135,365 - NIAGMN_26385 0.12 -0.3
5,135,499 - NIAGMN_26385 0.29 +1.3
5,135,647 + NIAGMN_26385 0.48 -2.2
5,135,650 - NIAGMN_26385 0.48 +0.0
5,135,786 + NIAGMN_26385 0.65 -0.4
5,135,786 + NIAGMN_26385 0.65 -0.2
5,135,934 - NIAGMN_26385 0.84 +0.2

Or see this region's nucleotide sequence