Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26345

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdbpA and ynaL are separated by 32 nucleotidesynaL and zntB are separated by 274 nucleotideszntB and ynaN are separated by 13 nucleotidesynaN and dgcM are separated by 193 nucleotides NIAGMN_26330: dbpA - ATP-dependent RNA helicase DbpA, at 5,126,155 to 5,127,528 dbpA NIAGMN_26335: ynaL - Protein YnaL, at 5,127,561 to 5,127,731 ynaL NIAGMN_26345: zntB - zinc transporter ZntB, at 5,128,006 to 5,128,989 zntB NIAGMN_26350: ynaN - Protein YnaN, at 5,129,003 to 5,129,050 ynaN NIAGMN_26355: dgcM - diguanylate cyclase DgcM, at 5,129,244 to 5,130,476 dgcM Position (kb) 5128 5129Strain fitness (log2 ratio) -3 -2 -1 0 1at 5127.084 kb on + strand, within dbpAat 5127.458 kb on - strandat 5127.534 kb on - strandat 5127.731 kb on + strandat 5127.870 kb on - strandat 5127.870 kb on - strandat 5128.132 kb on + strand, within zntBat 5128.257 kb on + strand, within zntBat 5128.409 kb on - strand, within zntBat 5128.664 kb on - strand, within zntBat 5128.851 kb on - strand, within zntBat 5129.129 kb on - strandat 5129.184 kb on - strandat 5129.500 kb on + strand, within dgcMat 5129.654 kb on + strand, within dgcMat 5129.783 kb on + strand, within dgcMat 5129.945 kb on + strand, within dgcMat 5129.945 kb on + strand, within dgcMat 5129.945 kb on + strand, within dgcM

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,127,084 + dbpA NIAGMN_26330 0.68 +0.3
5,127,458 - -0.1
5,127,534 - -0.2
5,127,731 + -0.7
5,127,870 - +0.4
5,127,870 - +0.9
5,128,132 + zntB NIAGMN_26345 0.13 -1.1
5,128,257 + zntB NIAGMN_26345 0.26 -0.1
5,128,409 - zntB NIAGMN_26345 0.41 -0.7
5,128,664 - zntB NIAGMN_26345 0.67 -0.9
5,128,851 - zntB NIAGMN_26345 0.86 -0.7
5,129,129 - +0.3
5,129,184 - +0.4
5,129,500 + dgcM NIAGMN_26355 0.21 -0.5
5,129,654 + dgcM NIAGMN_26355 0.33 +0.1
5,129,783 + dgcM NIAGMN_26355 0.44 -1.0
5,129,945 + dgcM NIAGMN_26355 0.57 -2.9
5,129,945 + dgcM NIAGMN_26355 0.57 -3.5
5,129,945 + dgcM NIAGMN_26355 0.57 +0.1

Or see this region's nucleotide sequence