Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_26145 and NIAGMN_26160 are separated by 243 nucleotides NIAGMN_26160 and terB overlap by 188 nucleotides terB and Arg_trna are separated by 169 nucleotides Arg_trna and Ile2_trna are separated by 100 nucleotides Ile2_trna and NIAGMN_26180 are separated by 139 nucleotides
NIAGMN_26145: NIAGMN_26145 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 5,102,662 to 5,104,515
_26145
NIAGMN_26160: NIAGMN_26160 - hypothetical protein, at 5,104,759 to 5,105,277
_26160
NIAGMN_26165: terB - tellurite resistance protein, at 5,105,090 to 5,105,521
terB
NIAGMN_26170: Arg_trna - tRNA-Arg(tct), at 5,105,691 to 5,105,767
_trna
NIAGMN_26175: Ile2_trna - tRNA-Ile2(cat), at 5,105,868 to 5,105,943
_trna
NIAGMN_26180: NIAGMN_26180 - antiterminator, at 5,106,083 to 5,106,637
_26180
Position (kb) 5104
5105
5106 Strain fitness (log2 ratio) -1
0
1 at 5104.542 kb on + strand at 5104.601 kb on - strand at 5105.303 kb on - strand, within terB at 5105.360 kb on + strand, within terB at 5106.191 kb on + strand, within NIAGMN_26180 at 5106.242 kb on - strand, within NIAGMN_26180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,104,542 + +0.2 5,104,601 - -0.3 5,105,303 - terB NIAGMN_26165 0.49 -1.0 5,105,360 + terB NIAGMN_26165 0.62 +0.3 5,106,191 + NIAGMN_26180 0.19 +1.4 5,106,242 - NIAGMN_26180 0.29 -0.8
Or see this region's nucleotide sequence