Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25920

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25910 and ydbL are separated by 413 nucleotidesydbL and NIAGMN_25920 are separated by 7 nucleotidesNIAGMN_25920 and ynbE overlap by 4 nucleotides NIAGMN_25910: NIAGMN_25910 - surface-exposed virulence protein BigA, at 5,058,747 to 5,061,782 _25910 NIAGMN_25915: ydbL - DUF1318 domain-containing protein, at 5,062,196 to 5,062,519 ydbL NIAGMN_25920: NIAGMN_25920 - YnbE family lipoprotein, at 5,062,527 to 5,062,712 _25920 NIAGMN_25925: ynbE - YdbH family protein, at 5,062,709 to 5,065,348 ynbE Position (kb) 5062 5063Strain fitness (log2 ratio) -1 0 1at 5061.527 kb on - strandat 5062.088 kb on - strandat 5062.870 kb on + strandat 5062.969 kb on - strandat 5063.234 kb on + strand, within ynbEat 5063.363 kb on - strand, within ynbE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,061,527 - +1.3
5,062,088 - -0.1
5,062,870 + -0.6
5,062,969 - -0.6
5,063,234 + ynbE NIAGMN_25925 0.20 +0.8
5,063,363 - ynbE NIAGMN_25925 0.25 +0.1

Or see this region's nucleotide sequence