Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_25905 and NIAGMN_25910 are separated by 219 nucleotides NIAGMN_25910 and ydbL are separated by 413 nucleotides ydbL and NIAGMN_25920 are separated by 7 nucleotides NIAGMN_25920 and ynbE overlap by 4 nucleotides
NIAGMN_25905: NIAGMN_25905 - BigB-like protein, at 5,056,068 to 5,058,527
_25905
NIAGMN_25910: NIAGMN_25910 - surface-exposed virulence protein BigA, at 5,058,747 to 5,061,782
_25910
NIAGMN_25915: ydbL - DUF1318 domain-containing protein, at 5,062,196 to 5,062,519
ydbL
NIAGMN_25920: NIAGMN_25920 - YnbE family lipoprotein, at 5,062,527 to 5,062,712
_25920
NIAGMN_25925: ynbE - YdbH family protein, at 5,062,709 to 5,065,348
ynbE
Position (kb)
5058
5059
5060
5061
5062 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5057.846 kb on - strand, within NIAGMN_25905 at 5058.071 kb on + strand, within NIAGMN_25905 at 5058.076 kb on - strand, within NIAGMN_25905 at 5058.347 kb on + strand at 5058.543 kb on - strand at 5058.657 kb on + strand at 5058.714 kb on - strand at 5058.715 kb on + strand at 5059.072 kb on + strand, within NIAGMN_25910 at 5059.134 kb on - strand, within NIAGMN_25910 at 5059.250 kb on - strand, within NIAGMN_25910 at 5059.633 kb on + strand, within NIAGMN_25910 at 5059.774 kb on + strand, within NIAGMN_25910 at 5059.901 kb on + strand, within NIAGMN_25910 at 5059.908 kb on - strand, within NIAGMN_25910 at 5060.141 kb on + strand, within NIAGMN_25910 at 5060.486 kb on + strand, within NIAGMN_25910 at 5060.572 kb on + strand, within NIAGMN_25910 at 5060.574 kb on + strand, within NIAGMN_25910 at 5061.344 kb on + strand, within NIAGMN_25910 at 5061.405 kb on - strand, within NIAGMN_25910 at 5061.527 kb on - strand at 5062.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,057,846 - NIAGMN_25905 0.72 +1.2 5,058,071 + NIAGMN_25905 0.81 -0.3 5,058,076 - NIAGMN_25905 0.82 +1.4 5,058,347 + +1.0 5,058,543 - -0.3 5,058,657 + -0.4 5,058,714 - -1.0 5,058,715 + -0.5 5,059,072 + NIAGMN_25910 0.11 -1.2 5,059,134 - NIAGMN_25910 0.13 -0.3 5,059,250 - NIAGMN_25910 0.17 +0.4 5,059,633 + NIAGMN_25910 0.29 -0.8 5,059,774 + NIAGMN_25910 0.34 -0.0 5,059,901 + NIAGMN_25910 0.38 +1.1 5,059,908 - NIAGMN_25910 0.38 -2.9 5,060,141 + NIAGMN_25910 0.46 +2.5 5,060,486 + NIAGMN_25910 0.57 -1.3 5,060,572 + NIAGMN_25910 0.60 +0.4 5,060,574 + NIAGMN_25910 0.60 +1.0 5,061,344 + NIAGMN_25910 0.86 +1.7 5,061,405 - NIAGMN_25910 0.88 -0.5 5,061,527 - +1.3 5,062,088 - -0.1
Or see this region's nucleotide sequence