Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25910

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_25905 and NIAGMN_25910 are separated by 219 nucleotidesNIAGMN_25910 and ydbL are separated by 413 nucleotidesydbL and NIAGMN_25920 are separated by 7 nucleotidesNIAGMN_25920 and ynbE overlap by 4 nucleotides NIAGMN_25905: NIAGMN_25905 - BigB-like protein, at 5,056,068 to 5,058,527 _25905 NIAGMN_25910: NIAGMN_25910 - surface-exposed virulence protein BigA, at 5,058,747 to 5,061,782 _25910 NIAGMN_25915: ydbL - DUF1318 domain-containing protein, at 5,062,196 to 5,062,519 ydbL NIAGMN_25920: NIAGMN_25920 - YnbE family lipoprotein, at 5,062,527 to 5,062,712 _25920 NIAGMN_25925: ynbE - YdbH family protein, at 5,062,709 to 5,065,348 ynbE Position (kb) 5058 5059 5060 5061 5062Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5057.846 kb on - strand, within NIAGMN_25905at 5058.071 kb on + strand, within NIAGMN_25905at 5058.076 kb on - strand, within NIAGMN_25905at 5058.347 kb on + strandat 5058.543 kb on - strandat 5058.657 kb on + strandat 5058.714 kb on - strandat 5058.715 kb on + strandat 5059.072 kb on + strand, within NIAGMN_25910at 5059.134 kb on - strand, within NIAGMN_25910at 5059.250 kb on - strand, within NIAGMN_25910at 5059.633 kb on + strand, within NIAGMN_25910at 5059.774 kb on + strand, within NIAGMN_25910at 5059.901 kb on + strand, within NIAGMN_25910at 5059.908 kb on - strand, within NIAGMN_25910at 5060.141 kb on + strand, within NIAGMN_25910at 5060.486 kb on + strand, within NIAGMN_25910at 5060.572 kb on + strand, within NIAGMN_25910at 5060.574 kb on + strand, within NIAGMN_25910at 5061.344 kb on + strand, within NIAGMN_25910at 5061.405 kb on - strand, within NIAGMN_25910at 5061.527 kb on - strandat 5062.088 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
5,057,846 - NIAGMN_25905 0.72 +1.2
5,058,071 + NIAGMN_25905 0.81 -0.3
5,058,076 - NIAGMN_25905 0.82 +1.4
5,058,347 + +1.0
5,058,543 - -0.3
5,058,657 + -0.4
5,058,714 - -1.0
5,058,715 + -0.5
5,059,072 + NIAGMN_25910 0.11 -1.2
5,059,134 - NIAGMN_25910 0.13 -0.3
5,059,250 - NIAGMN_25910 0.17 +0.4
5,059,633 + NIAGMN_25910 0.29 -0.8
5,059,774 + NIAGMN_25910 0.34 -0.0
5,059,901 + NIAGMN_25910 0.38 +1.1
5,059,908 - NIAGMN_25910 0.38 -2.9
5,060,141 + NIAGMN_25910 0.46 +2.5
5,060,486 + NIAGMN_25910 0.57 -1.3
5,060,572 + NIAGMN_25910 0.60 +0.4
5,060,574 + NIAGMN_25910 0.60 +1.0
5,061,344 + NIAGMN_25910 0.86 +1.7
5,061,405 - NIAGMN_25910 0.88 -0.5
5,061,527 - +1.3
5,062,088 - -0.1

Or see this region's nucleotide sequence