Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25730

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcR and hicB are separated by 78 nucleotideshicB and hicA are separated by 24 nucleotideshicA and yncJ are separated by 281 nucleotidesyncJ and rlhA are separated by 91 nucleotides NIAGMN_25715: ydcR - Uncharacterized HTH-type transcriptional regulator YdcR, at 5,018,729 to 5,020,135 ydcR NIAGMN_25720: hicB - type II toxin-antitoxin system antitoxin HicB, at 5,020,214 to 5,020,651 hicB NIAGMN_25725: hicA - type II toxin-antitoxin system mRNA interferase toxin HicA, at 5,020,676 to 5,020,852 hicA NIAGMN_25730: yncJ - Uncharacterized protein YncJ, at 5,021,134 to 5,021,304 yncJ NIAGMN_25735: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 5,021,396 to 5,023,399 rlhA Position (kb) 5021 5022Strain fitness (log2 ratio) -3 -2 -1 0 1at 5020.416 kb on - strand, within hicBat 5020.438 kb on + strand, within hicBat 5020.875 kb on + strandat 5020.876 kb on - strandat 5020.934 kb on - strandat 5021.016 kb on - strandat 5021.043 kb on + strandat 5021.351 kb on - strandat 5021.547 kb on - strandat 5021.694 kb on + strand, within rlhAat 5021.835 kb on + strand, within rlhAat 5021.930 kb on - strand, within rlhAat 5021.930 kb on - strand, within rlhA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,020,416 - hicB NIAGMN_25720 0.46 +0.6
5,020,438 + hicB NIAGMN_25720 0.51 -3.6
5,020,875 + -1.7
5,020,876 - -1.0
5,020,934 - +0.2
5,021,016 - +0.7
5,021,043 + +0.6
5,021,351 - -1.3
5,021,547 - -0.2
5,021,694 + rlhA NIAGMN_25735 0.15 -1.2
5,021,835 + rlhA NIAGMN_25735 0.22 +0.5
5,021,930 - rlhA NIAGMN_25735 0.27 +0.6
5,021,930 - rlhA NIAGMN_25735 0.27 -0.0

Or see this region's nucleotide sequence