Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25520

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnG and yddG are separated by 288 nucleotidesyddG and ompC2 are separated by 258 nucleotides NIAGMN_25515: fdnG - formate dehydrogenase-N subunit alpha, at 4,974,031 to 4,977,078 fdnG NIAGMN_25520: yddG - aromatic amino acid efflux DMT transporter YddG, at 4,977,367 to 4,978,191 yddG NIAGMN_25525: ompC2 - Outer membrane porin C 2, at 4,978,450 to 4,979,550 ompC2 Position (kb) 4977 4978 4979Strain fitness (log2 ratio) -2 -1 0 1at 4976.512 kb on + strand, within fdnGat 4976.893 kb on - strandat 4976.894 kb on + strandat 4976.895 kb on - strandat 4976.895 kb on - strandat 4977.105 kb on - strandat 4977.344 kb on + strandat 4977.557 kb on + strand, within yddGat 4977.943 kb on - strand, within yddGat 4978.798 kb on + strand, within ompC2at 4978.893 kb on + strand, within ompC2at 4978.904 kb on + strand, within ompC2at 4979.178 kb on + strand, within ompC2

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,976,512 + fdnG NIAGMN_25515 0.81 +0.7
4,976,893 - -1.1
4,976,894 + -0.2
4,976,895 - -0.0
4,976,895 - -0.6
4,977,105 - +0.9
4,977,344 + +0.5
4,977,557 + yddG NIAGMN_25520 0.23 -0.5
4,977,943 - yddG NIAGMN_25520 0.70 +0.9
4,978,798 + ompC2 NIAGMN_25525 0.32 -1.9
4,978,893 + ompC2 NIAGMN_25525 0.40 +0.8
4,978,904 + ompC2 NIAGMN_25525 0.41 +0.2
4,979,178 + ompC2 NIAGMN_25525 0.66 +0.7

Or see this region's nucleotide sequence