Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25375

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeQ and ydeP are separated by 333 nucleotidesydeP and safA are separated by 247 nucleotidessafA and ydeO are separated by 73 nucleotides NIAGMN_25370: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 4,936,922 to 4,937,836 ydeQ NIAGMN_25375: ydeP - acid resistance putative oxidoreductase YdeP, at 4,938,170 to 4,940,449 ydeP NIAGMN_25380: safA - two-component system connector SafA, at 4,940,697 to 4,940,894 safA NIAGMN_25385: ydeO - acid stress response transcriptional regulator YdeO, at 4,940,968 to 4,941,729 ydeO Position (kb) 4938 4939 4940 4941Strain fitness (log2 ratio) -2 -1 0 1at 4937.202 kb on - strand, within ydeQat 4937.547 kb on + strand, within ydeQat 4937.825 kb on - strandat 4938.109 kb on - strandat 4938.113 kb on - strandat 4938.167 kb on + strandat 4938.341 kb on - strandat 4938.414 kb on + strand, within ydePat 4938.513 kb on - strand, within ydePat 4938.688 kb on + strand, within ydePat 4938.689 kb on - strand, within ydePat 4938.756 kb on + strand, within ydePat 4938.820 kb on + strand, within ydePat 4938.997 kb on + strand, within ydePat 4939.232 kb on + strand, within ydePat 4939.339 kb on + strand, within ydePat 4939.521 kb on + strand, within ydePat 4939.522 kb on - strand, within ydePat 4939.636 kb on - strand, within ydePat 4939.682 kb on + strand, within ydePat 4939.683 kb on - strand, within ydePat 4939.705 kb on + strand, within ydePat 4940.126 kb on + strand, within ydePat 4940.147 kb on - strand, within ydePat 4940.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,937,202 - ydeQ NIAGMN_25370 0.31 -0.5
4,937,547 + ydeQ NIAGMN_25370 0.68 -0.2
4,937,825 - -0.2
4,938,109 - -2.2
4,938,113 - -2.5
4,938,167 + +0.7
4,938,341 - +1.5
4,938,414 + ydeP NIAGMN_25375 0.11 -0.8
4,938,513 - ydeP NIAGMN_25375 0.15 +0.3
4,938,688 + ydeP NIAGMN_25375 0.23 -1.2
4,938,689 - ydeP NIAGMN_25375 0.23 -0.1
4,938,756 + ydeP NIAGMN_25375 0.26 +0.2
4,938,820 + ydeP NIAGMN_25375 0.29 -1.4
4,938,997 + ydeP NIAGMN_25375 0.36 +0.5
4,939,232 + ydeP NIAGMN_25375 0.47 -0.8
4,939,339 + ydeP NIAGMN_25375 0.51 -0.1
4,939,521 + ydeP NIAGMN_25375 0.59 +0.5
4,939,522 - ydeP NIAGMN_25375 0.59 -0.6
4,939,636 - ydeP NIAGMN_25375 0.64 +0.8
4,939,682 + ydeP NIAGMN_25375 0.66 +0.4
4,939,683 - ydeP NIAGMN_25375 0.66 -0.1
4,939,705 + ydeP NIAGMN_25375 0.67 +0.7
4,940,126 + ydeP NIAGMN_25375 0.86 -0.7
4,940,147 - ydeP NIAGMN_25375 0.87 -1.1
4,940,639 - -0.2

Or see this region's nucleotide sequence