Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25360

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimA and ydeS are separated by 13 nucleotidesydeS and ydeR are separated by 12 nucleotidesydeR and ydeQ are separated by 59 nucleotides NIAGMN_25355: fimA - type 1 fimbrial major subunit FimA, at 4,933,151 to 4,935,802 fimA NIAGMN_25360: ydeS - Uncharacterized fimbrial-like protein YdeS, at 4,935,816 to 4,936,346 ydeS NIAGMN_25365: ydeR - Uncharacterized fimbrial-like protein YdeR, at 4,936,359 to 4,936,862 ydeR NIAGMN_25370: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 4,936,922 to 4,937,836 ydeQ Position (kb) 4935 4936 4937Strain fitness (log2 ratio) -1 0 1at 4935.032 kb on - strand, within fimAat 4935.202 kb on + strand, within fimAat 4937.202 kb on - strand, within ydeQ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,935,032 - fimA NIAGMN_25355 0.71 -0.3
4,935,202 + fimA NIAGMN_25355 0.77 -0.4
4,937,202 - ydeQ NIAGMN_25370 0.31 -0.5

Or see this region's nucleotide sequence