Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25340

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25335 and NIAGMN_25340 are separated by 157 nucleotidesNIAGMN_25340 and fimA are separated by 973 nucleotides NIAGMN_25335: NIAGMN_25335 - Autotransporter domain-containing protein, at 4,927,921 to 4,929,321 _25335 NIAGMN_25340: NIAGMN_25340 - Protein HipA, at 4,929,479 to 4,930,501 _25340 NIAGMN_25345: fimA - type 1 fimbrial major subunit FimA, at 4,931,475 to 4,932,038 fimA Position (kb) 4929 4930 4931Strain fitness (log2 ratio) -2 -1 0 1 2at 4928.553 kb on - strand, within NIAGMN_25335at 4928.650 kb on - strand, within NIAGMN_25335at 4928.726 kb on - strand, within NIAGMN_25335at 4928.755 kb on + strand, within NIAGMN_25335at 4928.779 kb on - strand, within NIAGMN_25335at 4929.136 kb on + strand, within NIAGMN_25335at 4929.197 kb on + strandat 4929.225 kb on + strandat 4929.561 kb on + strandat 4929.718 kb on + strand, within NIAGMN_25340at 4930.929 kb on - strandat 4931.260 kb on + strandat 4931.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,928,553 - NIAGMN_25335 0.45 +0.8
4,928,650 - NIAGMN_25335 0.52 +0.2
4,928,726 - NIAGMN_25335 0.57 +0.3
4,928,755 + NIAGMN_25335 0.60 +1.9
4,928,779 - NIAGMN_25335 0.61 +0.4
4,929,136 + NIAGMN_25335 0.87 +0.6
4,929,197 + -0.2
4,929,225 + -2.7
4,929,561 + +0.9
4,929,718 + NIAGMN_25340 0.23 +0.5
4,930,929 - +0.9
4,931,260 + +0.0
4,931,322 + +0.0

Or see this region's nucleotide sequence