Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25290

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyneE and tam are separated by 3 nucleotidestam and lsrG are separated by 56 nucleotideslsrG and lsrF are separated by 23 nucleotideslsrF and lsrB are separated by 26 nucleotides NIAGMN_25280: yneE - UPF0187 protein YneE, at 4,912,957 to 4,913,871 yneE NIAGMN_25285: tam - trans-aconitate 2-methyltransferase, at 4,913,875 to 4,914,633 tam NIAGMN_25290: lsrG - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 4,914,690 to 4,914,980 lsrG NIAGMN_25295: lsrF - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 4,915,004 to 4,915,879 lsrF NIAGMN_25300: lsrB - autoinducer 2 ABC transporter substrate-binding protein LsrB, at 4,915,906 to 4,916,928 lsrB Position (kb) 4914 4915Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4914.278 kb on - strand, within tamat 4914.611 kb on - strandat 4914.769 kb on + strand, within lsrGat 4914.814 kb on + strand, within lsrGat 4914.892 kb on - strand, within lsrGat 4914.981 kb on - strandat 4915.264 kb on - strand, within lsrFat 4915.626 kb on - strand, within lsrFat 4915.626 kb on - strand, within lsrFat 4915.661 kb on + strand, within lsrFat 4915.662 kb on - strand, within lsrFat 4915.858 kb on + strandat 4915.898 kb on - strandat 4915.943 kb on - strandat 4915.964 kb on - strandat 4915.964 kb on - strandat 4915.964 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,914,278 - tam NIAGMN_25285 0.53 -0.5
4,914,611 - +0.6
4,914,769 + lsrG NIAGMN_25290 0.27 +0.5
4,914,814 + lsrG NIAGMN_25290 0.43 +0.6
4,914,892 - lsrG NIAGMN_25290 0.69 -2.9
4,914,981 - -0.3
4,915,264 - lsrF NIAGMN_25295 0.30 +1.9
4,915,626 - lsrF NIAGMN_25295 0.71 +1.5
4,915,626 - lsrF NIAGMN_25295 0.71 +1.3
4,915,661 + lsrF NIAGMN_25295 0.75 -0.8
4,915,662 - lsrF NIAGMN_25295 0.75 +1.5
4,915,858 + -2.1
4,915,898 - +0.6
4,915,943 - +0.8
4,915,964 - -2.0
4,915,964 - +0.5
4,915,964 - -0.5

Or see this region's nucleotide sequence