Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glsB and yneG overlap by 1 nucleotides yneG and gGDEF are separated by 138 nucleotides gGDEF and uxaB are separated by 226 nucleotides
NIAGMN_25260: glsB - glutaminase B, at 4,908,240 to 4,909,166
glsB
NIAGMN_25265: yneG - Uncharacterized protein YneG, at 4,909,166 to 4,909,525
yneG
NIAGMN_25270: gGDEF - diguanylate cyclase, at 4,909,664 to 4,911,082
gGDEF
NIAGMN_25275: uxaB - tagaturonate reductase, at 4,911,309 to 4,912,760
uxaB
Position (kb) 4909
4910
4911
4912 Strain fitness (log2 ratio) -2
-1
0
1 at 4908.965 kb on + strand, within glsB at 4908.965 kb on + strand, within glsB at 4908.969 kb on + strand, within glsB at 4909.429 kb on + strand, within yneG at 4909.472 kb on + strand, within yneG at 4909.568 kb on - strand at 4909.648 kb on + strand at 4909.649 kb on - strand at 4909.662 kb on + strand at 4909.723 kb on + strand at 4909.763 kb on - strand at 4909.966 kb on + strand, within gGDEF at 4909.967 kb on - strand, within gGDEF at 4910.018 kb on - strand, within gGDEF at 4910.032 kb on - strand, within gGDEF at 4910.050 kb on + strand, within gGDEF at 4910.083 kb on + strand, within gGDEF at 4910.206 kb on + strand, within gGDEF at 4910.406 kb on + strand, within gGDEF at 4910.406 kb on + strand, within gGDEF at 4910.406 kb on + strand, within gGDEF at 4910.512 kb on + strand, within gGDEF at 4910.671 kb on - strand, within gGDEF at 4910.704 kb on + strand, within gGDEF at 4910.756 kb on - strand, within gGDEF at 4910.919 kb on - strand, within gGDEF at 4911.206 kb on - strand at 4912.041 kb on + strand, within uxaB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,908,965 + glsB NIAGMN_25260 0.78 +0.1 4,908,965 + glsB NIAGMN_25260 0.78 -0.4 4,908,969 + glsB NIAGMN_25260 0.79 -0.1 4,909,429 + yneG NIAGMN_25265 0.73 -0.4 4,909,472 + yneG NIAGMN_25265 0.85 +0.5 4,909,568 - -2.0 4,909,648 + -0.4 4,909,649 - +1.1 4,909,662 + +1.1 4,909,723 + -0.2 4,909,763 - -0.1 4,909,966 + gGDEF NIAGMN_25270 0.21 +0.6 4,909,967 - gGDEF NIAGMN_25270 0.21 -0.4 4,910,018 - gGDEF NIAGMN_25270 0.25 +1.6 4,910,032 - gGDEF NIAGMN_25270 0.26 -0.6 4,910,050 + gGDEF NIAGMN_25270 0.27 +0.7 4,910,083 + gGDEF NIAGMN_25270 0.30 +0.6 4,910,206 + gGDEF NIAGMN_25270 0.38 +1.4 4,910,406 + gGDEF NIAGMN_25270 0.52 +0.9 4,910,406 + gGDEF NIAGMN_25270 0.52 +0.5 4,910,406 + gGDEF NIAGMN_25270 0.52 -0.6 4,910,512 + gGDEF NIAGMN_25270 0.60 -0.1 4,910,671 - gGDEF NIAGMN_25270 0.71 +0.2 4,910,704 + gGDEF NIAGMN_25270 0.73 +0.9 4,910,756 - gGDEF NIAGMN_25270 0.77 -0.4 4,910,919 - gGDEF NIAGMN_25270 0.88 +1.1 4,911,206 - -1.4 4,912,041 + uxaB NIAGMN_25275 0.50 -0.6
Or see this region's nucleotide sequence