Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25250

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneK and yneK are separated by 78 nucleotidesyneK and yneJ are separated by 77 nucleotidesyneJ and sad are separated by 100 nucleotides NIAGMN_25240: yneK - putative protein YneK, at 4,904,613 to 4,904,861 yneK NIAGMN_25245: yneK - putative protein YneK, at 4,904,940 to 4,905,728 yneK NIAGMN_25250: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 4,905,806 to 4,906,687 yneJ NIAGMN_25255: sad - succinate-semialdehyde dehydrogenase, at 4,906,788 to 4,908,176 sad Position (kb) 4905 4906 4907Strain fitness (log2 ratio) -1 0 1 2at 4905.977 kb on - strand, within yneJat 4906.237 kb on + strand, within yneJat 4906.489 kb on - strand, within yneJat 4906.518 kb on - strand, within yneJat 4906.553 kb on + strand, within yneJat 4906.708 kb on - strandat 4906.796 kb on + strandat 4906.936 kb on + strand, within sadat 4907.085 kb on + strand, within sadat 4907.086 kb on - strand, within sadat 4907.123 kb on + strand, within sadat 4907.123 kb on + strand, within sadat 4907.186 kb on + strand, within sadat 4907.257 kb on - strand, within sadat 4907.260 kb on + strand, within sadat 4907.264 kb on + strand, within sadat 4907.341 kb on + strand, within sadat 4907.342 kb on - strand, within sadat 4907.342 kb on - strand, within sad

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,905,977 - yneJ NIAGMN_25250 0.19 +0.8
4,906,237 + yneJ NIAGMN_25250 0.49 -0.5
4,906,489 - yneJ NIAGMN_25250 0.77 -0.1
4,906,518 - yneJ NIAGMN_25250 0.81 +0.6
4,906,553 + yneJ NIAGMN_25250 0.85 -0.9
4,906,708 - +1.5
4,906,796 + -1.1
4,906,936 + sad NIAGMN_25255 0.11 -0.6
4,907,085 + sad NIAGMN_25255 0.21 +2.2
4,907,086 - sad NIAGMN_25255 0.21 +0.2
4,907,123 + sad NIAGMN_25255 0.24 +0.4
4,907,123 + sad NIAGMN_25255 0.24 -0.4
4,907,186 + sad NIAGMN_25255 0.29 +2.2
4,907,257 - sad NIAGMN_25255 0.34 +0.3
4,907,260 + sad NIAGMN_25255 0.34 -0.4
4,907,264 + sad NIAGMN_25255 0.34 -0.5
4,907,341 + sad NIAGMN_25255 0.40 -0.1
4,907,342 - sad NIAGMN_25255 0.40 -1.5
4,907,342 - sad NIAGMN_25255 0.40 +0.6

Or see this region's nucleotide sequence