Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eamA and marB are separated by 30 nucleotides marB and marA are separated by 31 nucleotides marA and marR are separated by 19 nucleotides marR and marC are separated by 211 nucleotides marC and ydeA are separated by 24 nucleotides
NIAGMN_25210: eamA - O-acetylserine/cysteine exporter, at 4,900,353 to 4,901,252
eamA
NIAGMN_25215: marB - multiple antibiotic resistance protein MarB, at 4,901,283 to 4,901,501
marB
NIAGMN_25220: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 4,901,533 to 4,901,916
marA
NIAGMN_25225: marR - multiple antibiotic resistance transcriptional regulator MarR, at 4,901,936 to 4,902,370
marR
NIAGMN_25230: marC - NAAT family transporter MarC, at 4,902,582 to 4,903,247
marC
NIAGMN_25235: ydeA - L-arabinose MFS transporter, at 4,903,272 to 4,904,462
ydeA
Position (kb)
4901
4902
4903 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4901.199 kb on + strand at 4901.284 kb on + strand at 4901.284 kb on + strand at 4901.285 kb on - strand at 4901.285 kb on - strand at 4901.356 kb on - strand, within marB at 4901.534 kb on + strand at 4901.535 kb on - strand at 4901.681 kb on + strand, within marA at 4902.030 kb on - strand, within marR at 4902.030 kb on - strand, within marR at 4902.030 kb on - strand, within marR at 4902.030 kb on - strand, within marR at 4902.030 kb on - strand, within marR at 4902.030 kb on - strand, within marR at 4902.051 kb on - strand, within marR at 4902.051 kb on - strand, within marR at 4902.051 kb on - strand, within marR at 4902.051 kb on - strand, within marR at 4902.071 kb on - strand, within marR at 4902.131 kb on - strand, within marR at 4902.209 kb on - strand, within marR at 4902.277 kb on - strand, within marR at 4902.277 kb on - strand, within marR at 4902.965 kb on + strand, within marC at 4903.191 kb on - strand at 4903.208 kb on + strand at 4903.317 kb on - strand at 4903.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,901,199 + -0.1 4,901,284 + -1.1 4,901,284 + -1.4 4,901,285 - +0.7 4,901,285 - -0.7 4,901,356 - marB NIAGMN_25215 0.33 +0.6 4,901,534 + -0.4 4,901,535 - -0.5 4,901,681 + marA NIAGMN_25220 0.39 +1.8 4,902,030 - marR NIAGMN_25225 0.22 -0.4 4,902,030 - marR NIAGMN_25225 0.22 +0.0 4,902,030 - marR NIAGMN_25225 0.22 -0.7 4,902,030 - marR NIAGMN_25225 0.22 +0.1 4,902,030 - marR NIAGMN_25225 0.22 -2.0 4,902,030 - marR NIAGMN_25225 0.22 -1.1 4,902,051 - marR NIAGMN_25225 0.26 +0.5 4,902,051 - marR NIAGMN_25225 0.26 -1.7 4,902,051 - marR NIAGMN_25225 0.26 -0.5 4,902,051 - marR NIAGMN_25225 0.26 +0.1 4,902,071 - marR NIAGMN_25225 0.31 +1.1 4,902,131 - marR NIAGMN_25225 0.45 +0.1 4,902,209 - marR NIAGMN_25225 0.63 -0.5 4,902,277 - marR NIAGMN_25225 0.78 +0.2 4,902,277 - marR NIAGMN_25225 0.78 +1.1 4,902,965 + marC NIAGMN_25230 0.58 +1.3 4,903,191 - +1.2 4,903,208 + +0.6 4,903,317 - -0.4 4,903,364 - +1.0
Or see this region's nucleotide sequence