Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25225

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteamA and marB are separated by 30 nucleotidesmarB and marA are separated by 31 nucleotidesmarA and marR are separated by 19 nucleotidesmarR and marC are separated by 211 nucleotidesmarC and ydeA are separated by 24 nucleotides NIAGMN_25210: eamA - O-acetylserine/cysteine exporter, at 4,900,353 to 4,901,252 eamA NIAGMN_25215: marB - multiple antibiotic resistance protein MarB, at 4,901,283 to 4,901,501 marB NIAGMN_25220: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 4,901,533 to 4,901,916 marA NIAGMN_25225: marR - multiple antibiotic resistance transcriptional regulator MarR, at 4,901,936 to 4,902,370 marR NIAGMN_25230: marC - NAAT family transporter MarC, at 4,902,582 to 4,903,247 marC NIAGMN_25235: ydeA - L-arabinose MFS transporter, at 4,903,272 to 4,904,462 ydeA Position (kb) 4901 4902 4903Strain fitness (log2 ratio) -2 -1 0 1 2at 4901.199 kb on + strandat 4901.284 kb on + strandat 4901.284 kb on + strandat 4901.285 kb on - strandat 4901.285 kb on - strandat 4901.356 kb on - strand, within marBat 4901.534 kb on + strandat 4901.535 kb on - strandat 4901.681 kb on + strand, within marAat 4902.030 kb on - strand, within marRat 4902.030 kb on - strand, within marRat 4902.030 kb on - strand, within marRat 4902.030 kb on - strand, within marRat 4902.030 kb on - strand, within marRat 4902.030 kb on - strand, within marRat 4902.051 kb on - strand, within marRat 4902.051 kb on - strand, within marRat 4902.051 kb on - strand, within marRat 4902.051 kb on - strand, within marRat 4902.071 kb on - strand, within marRat 4902.131 kb on - strand, within marRat 4902.209 kb on - strand, within marRat 4902.277 kb on - strand, within marRat 4902.277 kb on - strand, within marRat 4902.965 kb on + strand, within marCat 4903.191 kb on - strandat 4903.208 kb on + strandat 4903.317 kb on - strandat 4903.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,901,199 + -0.1
4,901,284 + -1.1
4,901,284 + -1.4
4,901,285 - +0.7
4,901,285 - -0.7
4,901,356 - marB NIAGMN_25215 0.33 +0.6
4,901,534 + -0.4
4,901,535 - -0.5
4,901,681 + marA NIAGMN_25220 0.39 +1.8
4,902,030 - marR NIAGMN_25225 0.22 -0.4
4,902,030 - marR NIAGMN_25225 0.22 +0.0
4,902,030 - marR NIAGMN_25225 0.22 -0.7
4,902,030 - marR NIAGMN_25225 0.22 +0.1
4,902,030 - marR NIAGMN_25225 0.22 -2.0
4,902,030 - marR NIAGMN_25225 0.22 -1.1
4,902,051 - marR NIAGMN_25225 0.26 +0.5
4,902,051 - marR NIAGMN_25225 0.26 -1.7
4,902,051 - marR NIAGMN_25225 0.26 -0.5
4,902,051 - marR NIAGMN_25225 0.26 +0.1
4,902,071 - marR NIAGMN_25225 0.31 +1.1
4,902,131 - marR NIAGMN_25225 0.45 +0.1
4,902,209 - marR NIAGMN_25225 0.63 -0.5
4,902,277 - marR NIAGMN_25225 0.78 +0.2
4,902,277 - marR NIAGMN_25225 0.78 +1.1
4,902,965 + marC NIAGMN_25230 0.58 +1.3
4,903,191 - +1.2
4,903,208 + +0.6
4,903,317 - -0.4
4,903,364 - +1.0

Or see this region's nucleotide sequence