Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25180

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeJ and ydeI are separated by 275 nucleotidesydeI and dgcZ are separated by 254 nucleotidesdgcZ and mgtS are separated by 218 nucleotidesmgtS and ftrA are separated by 107 nucleotides NIAGMN_25170: ydeJ - 2-oxo-tetronate isomerase, at 4,894,716 to 4,895,234 ydeJ NIAGMN_25175: ydeI - YdeI family stress tolerance OB fold protein, at 4,895,510 to 4,895,902 ydeI NIAGMN_25180: dgcZ - diguanylate cyclase DgcZ, at 4,896,157 to 4,897,047 dgcZ NIAGMN_25190: mgtS - protein MgtS, at 4,897,266 to 4,897,361 mgtS NIAGMN_25195: ftrA - transcriptional regulator FtrA, at 4,897,469 to 4,898,440 ftrA Position (kb) 4896 4897 4898Strain fitness (log2 ratio) -1 0 1 2at 4895.260 kb on + strandat 4895.413 kb on + strandat 4895.443 kb on + strandat 4896.240 kb on + strandat 4896.639 kb on - strand, within dgcZat 4897.082 kb on - strandat 4897.128 kb on + strandat 4897.128 kb on + strandat 4897.350 kb on - strand, within mgtSat 4897.350 kb on - strand, within mgtSat 4897.350 kb on - strand, within mgtSat 4897.363 kb on - strandat 4897.742 kb on - strand, within ftrAat 4898.004 kb on - strand, within ftrA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,895,260 + +0.4
4,895,413 + +0.1
4,895,443 + +2.2
4,896,240 + +0.2
4,896,639 - dgcZ NIAGMN_25180 0.54 +0.2
4,897,082 - +0.8
4,897,128 + +0.0
4,897,128 + -0.9
4,897,350 - mgtS NIAGMN_25190 0.88 +1.2
4,897,350 - mgtS NIAGMN_25190 0.88 -0.6
4,897,350 - mgtS NIAGMN_25190 0.88 +0.4
4,897,363 - -0.1
4,897,742 - ftrA NIAGMN_25195 0.28 +0.3
4,898,004 - ftrA NIAGMN_25195 0.55 -1.6

Or see this region's nucleotide sequence