Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25170

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcp and ydeJ are separated by 44 nucleotidesydeJ and ydeI are separated by 275 nucleotidesydeI and dgcZ are separated by 254 nucleotides NIAGMN_25165: dcp - peptidyl-dipeptidase Dcp, at 4,892,626 to 4,894,671 dcp NIAGMN_25170: ydeJ - 2-oxo-tetronate isomerase, at 4,894,716 to 4,895,234 ydeJ NIAGMN_25175: ydeI - YdeI family stress tolerance OB fold protein, at 4,895,510 to 4,895,902 ydeI NIAGMN_25180: dgcZ - diguanylate cyclase DgcZ, at 4,896,157 to 4,897,047 dgcZ Position (kb) 4894 4895 4896Strain fitness (log2 ratio) -1 0 1 2at 4894.395 kb on + strand, within dcpat 4894.668 kb on - strandat 4894.720 kb on - strandat 4894.811 kb on - strand, within ydeJat 4895.260 kb on + strandat 4895.413 kb on + strandat 4895.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,894,395 + dcp NIAGMN_25165 0.86 -0.4
4,894,668 - -0.4
4,894,720 - -0.9
4,894,811 - ydeJ NIAGMN_25170 0.18 +0.1
4,895,260 + +0.4
4,895,413 + +0.1
4,895,443 + +2.2

Or see this region's nucleotide sequence