Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25165

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydfH and ydfG are separated by 88 nucleotidesydfG and dcp are separated by 136 nucleotidesdcp and ydeJ are separated by 44 nucleotidesydeJ and ydeI are separated by 275 nucleotides NIAGMN_25155: ydfH - DNA-binding transcriptional regulator YdfH, at 4,890,968 to 4,891,654 ydfH NIAGMN_25160: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 4,891,743 to 4,892,489 ydfG NIAGMN_25165: dcp - peptidyl-dipeptidase Dcp, at 4,892,626 to 4,894,671 dcp NIAGMN_25170: ydeJ - 2-oxo-tetronate isomerase, at 4,894,716 to 4,895,234 ydeJ NIAGMN_25175: ydeI - YdeI family stress tolerance OB fold protein, at 4,895,510 to 4,895,902 ydeI Position (kb) 4892 4893 4894 4895Strain fitness (log2 ratio) -2 -1 0 1 2at 4892.118 kb on - strand, within ydfGat 4892.344 kb on + strand, within ydfGat 4892.637 kb on + strandat 4892.833 kb on - strand, within dcpat 4892.889 kb on - strand, within dcpat 4892.940 kb on + strand, within dcpat 4892.940 kb on + strand, within dcpat 4892.940 kb on + strand, within dcpat 4893.166 kb on - strand, within dcpat 4894.395 kb on + strand, within dcpat 4894.668 kb on - strandat 4894.720 kb on - strandat 4894.811 kb on - strand, within ydeJat 4895.260 kb on + strandat 4895.413 kb on + strandat 4895.443 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,892,118 - ydfG NIAGMN_25160 0.50 +0.2
4,892,344 + ydfG NIAGMN_25160 0.80 +0.2
4,892,637 + +0.1
4,892,833 - dcp NIAGMN_25165 0.10 +0.5
4,892,889 - dcp NIAGMN_25165 0.13 +0.5
4,892,940 + dcp NIAGMN_25165 0.15 -2.7
4,892,940 + dcp NIAGMN_25165 0.15 +1.0
4,892,940 + dcp NIAGMN_25165 0.15 -0.4
4,893,166 - dcp NIAGMN_25165 0.26 -0.7
4,894,395 + dcp NIAGMN_25165 0.86 -0.4
4,894,668 - -0.4
4,894,720 - -0.9
4,894,811 - ydeJ NIAGMN_25170 0.18 +0.1
4,895,260 + +0.4
4,895,413 + +0.1
4,895,443 + +2.2

Or see this region's nucleotide sequence