Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25010

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25005 and gpA1 overlap by 26 nucleotidesgpA1 and NIAGMN_25015 overlap by 4 nucleotidesNIAGMN_25015 and NIAGMN_25020 overlap by 4 nucleotides NIAGMN_25005: NIAGMN_25005 - DNA-packaging protein, at 4,863,828 to 4,864,373 _25005 NIAGMN_25010: gpA1 - terminase, at 4,864,348 to 4,866,273 gpA1 NIAGMN_25015: NIAGMN_25015 - Lambda prophage-derived head-to-tail joining protein W, at 4,866,270 to 4,866,476 _25015 NIAGMN_25020: NIAGMN_25020 - Phage portal protein, at 4,866,473 to 4,868,074 _25020 Position (kb) 4864 4865 4866 4867Strain fitness (log2 ratio) -2 -1 0 1at 4863.664 kb on + strandat 4864.094 kb on + strand, within NIAGMN_25005at 4865.763 kb on + strand, within gpA1at 4865.763 kb on + strand, within gpA1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,863,664 + +0.6
4,864,094 + NIAGMN_25005 0.49 -0.6
4,865,763 + gpA1 NIAGMN_25010 0.73 -0.8
4,865,763 + gpA1 NIAGMN_25010 0.73 -2.0

Or see this region's nucleotide sequence