Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24745

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespK and potB are separated by 363 nucleotidespotB and potA overlap by 17 nucleotides NIAGMN_24740: espK - type III secretion system effector EspK, at 4,821,895 to 4,823,256 espK NIAGMN_24745: potB - spermidine/putrescine ABC transporter permease PotB, at 4,823,620 to 4,824,483 potB NIAGMN_24750: potA - spermidine/putrescine ABC transporter ATP-binding protein PotA, at 4,824,467 to 4,825,603 potA Position (kb) 4823 4824 4825Strain fitness (log2 ratio) -2 -1 0 1 2at 4822.763 kb on + strand, within espKat 4822.767 kb on + strand, within espKat 4822.807 kb on + strand, within espKat 4823.544 kb on + strandat 4823.544 kb on + strandat 4823.759 kb on - strand, within potBat 4823.816 kb on + strand, within potBat 4823.817 kb on - strand, within potBat 4824.455 kb on - strandat 4824.518 kb on - strandat 4824.692 kb on - strand, within potAat 4824.769 kb on - strand, within potAat 4824.769 kb on - strand, within potAat 4824.769 kb on - strand, within potAat 4825.006 kb on + strand, within potAat 4825.019 kb on - strand, within potA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,822,763 + espK NIAGMN_24740 0.64 +0.9
4,822,767 + espK NIAGMN_24740 0.64 +0.9
4,822,807 + espK NIAGMN_24740 0.67 +1.2
4,823,544 + +1.9
4,823,544 + -1.2
4,823,759 - potB NIAGMN_24745 0.16 +1.2
4,823,816 + potB NIAGMN_24745 0.23 +2.0
4,823,817 - potB NIAGMN_24745 0.23 -0.3
4,824,455 - -2.7
4,824,518 - -1.0
4,824,692 - potA NIAGMN_24750 0.20 +0.7
4,824,769 - potA NIAGMN_24750 0.27 -0.6
4,824,769 - potA NIAGMN_24750 0.27 +1.0
4,824,769 - potA NIAGMN_24750 0.27 +0.3
4,825,006 + potA NIAGMN_24750 0.47 -0.5
4,825,019 - potA NIAGMN_24750 0.49 -0.3

Or see this region's nucleotide sequence