Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24540

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_24525 and NIAGMN_24530 overlap by 4 nucleotidesNIAGMN_24530 and NIAGMN_24540 are separated by 314 nucleotidesNIAGMN_24540 and NIAGMN_24545 are separated by 147 nucleotidesNIAGMN_24545 and NIAGMN_24550 are separated by 37 nucleotidesNIAGMN_24550 and NIAGMN_24555 are separated by 75 nucleotidesNIAGMN_24555 and NIAGMN_24560 are separated by 4 nucleotides NIAGMN_24525: NIAGMN_24525 - TciA/TerB-like protein, at 4,788,230 to 4,788,376 _24525 NIAGMN_24530: NIAGMN_24530 - TciB/TerA-like protein, at 4,788,373 to 4,788,540 _24530 NIAGMN_24540: NIAGMN_24540 - sialate O-acetylesterase, at 4,788,855 to 4,790,792 _24540 NIAGMN_24545: NIAGMN_24545 - DUF1378 domain-containing protein, at 4,790,940 to 4,791,122 _24545 NIAGMN_24550: NIAGMN_24550 - DUF826 domain-containing protein, at 4,791,160 to 4,791,429 _24550 NIAGMN_24555: NIAGMN_24555 - lysis protein, at 4,791,505 to 4,791,720 _24555 NIAGMN_24560: NIAGMN_24560 - DUF1327 domain-containing protein, at 4,791,725 to 4,792,069 _24560 Position (kb) 4788 4789 4790 4791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4787.905 kb on + strandat 4788.977 kb on + strandat 4788.977 kb on + strandat 4789.089 kb on + strand, within NIAGMN_24540at 4789.090 kb on - strand, within NIAGMN_24540at 4789.090 kb on - strand, within NIAGMN_24540at 4789.158 kb on + strand, within NIAGMN_24540at 4789.158 kb on + strand, within NIAGMN_24540at 4789.273 kb on + strand, within NIAGMN_24540at 4789.273 kb on + strand, within NIAGMN_24540at 4789.353 kb on - strand, within NIAGMN_24540at 4789.455 kb on + strand, within NIAGMN_24540at 4789.682 kb on + strand, within NIAGMN_24540at 4790.255 kb on + strand, within NIAGMN_24540at 4790.412 kb on + strand, within NIAGMN_24540at 4790.523 kb on + strand, within NIAGMN_24540at 4790.790 kb on + strandat 4790.920 kb on - strandat 4790.951 kb on - strandat 4790.967 kb on + strand, within NIAGMN_24545at 4790.994 kb on + strand, within NIAGMN_24545at 4791.030 kb on + strand, within NIAGMN_24545at 4791.427 kb on + strandat 4791.427 kb on + strandat 4791.427 kb on + strandat 4791.433 kb on + strandat 4791.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,787,905 + -0.3
4,788,977 + +2.0
4,788,977 + +0.3
4,789,089 + NIAGMN_24540 0.12 +1.1
4,789,090 - NIAGMN_24540 0.12 +1.8
4,789,090 - NIAGMN_24540 0.12 +0.7
4,789,158 + NIAGMN_24540 0.16 -0.4
4,789,158 + NIAGMN_24540 0.16 -1.8
4,789,273 + NIAGMN_24540 0.22 -1.2
4,789,273 + NIAGMN_24540 0.22 -0.4
4,789,353 - NIAGMN_24540 0.26 -0.6
4,789,455 + NIAGMN_24540 0.31 +1.6
4,789,682 + NIAGMN_24540 0.43 +2.5
4,790,255 + NIAGMN_24540 0.72 +0.1
4,790,412 + NIAGMN_24540 0.80 -2.1
4,790,523 + NIAGMN_24540 0.86 -2.1
4,790,790 + -1.3
4,790,920 - +0.0
4,790,951 - -3.9
4,790,967 + NIAGMN_24545 0.15 -0.5
4,790,994 + NIAGMN_24545 0.30 +0.4
4,791,030 + NIAGMN_24545 0.49 +1.5
4,791,427 + +0.6
4,791,427 + +1.1
4,791,427 + -1.3
4,791,433 + +0.6
4,791,433 + +0.8

Or see this region's nucleotide sequence