Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24525

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_24520 and NIAGMN_24525 are separated by 453 nucleotidesNIAGMN_24525 and NIAGMN_24530 overlap by 4 nucleotidesNIAGMN_24530 and NIAGMN_24540 are separated by 314 nucleotides NIAGMN_24520: NIAGMN_24520 - antitermination protein, at 4,786,955 to 4,787,776 _24520 NIAGMN_24525: NIAGMN_24525 - TciA/TerB-like protein, at 4,788,230 to 4,788,376 _24525 NIAGMN_24530: NIAGMN_24530 - TciB/TerA-like protein, at 4,788,373 to 4,788,540 _24530 NIAGMN_24540: NIAGMN_24540 - sialate O-acetylesterase, at 4,788,855 to 4,790,792 _24540 Position (kb) 4788 4789Strain fitness (log2 ratio) -2 -1 0 1 2at 4787.636 kb on - strand, within NIAGMN_24520at 4787.644 kb on - strand, within NIAGMN_24520at 4787.905 kb on + strandat 4788.977 kb on + strandat 4788.977 kb on + strandat 4789.089 kb on + strand, within NIAGMN_24540at 4789.090 kb on - strand, within NIAGMN_24540at 4789.090 kb on - strand, within NIAGMN_24540at 4789.158 kb on + strand, within NIAGMN_24540at 4789.158 kb on + strand, within NIAGMN_24540at 4789.273 kb on + strand, within NIAGMN_24540at 4789.273 kb on + strand, within NIAGMN_24540at 4789.353 kb on - strand, within NIAGMN_24540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,787,636 - NIAGMN_24520 0.83 -1.5
4,787,644 - NIAGMN_24520 0.84 +0.5
4,787,905 + -0.3
4,788,977 + +2.0
4,788,977 + +0.3
4,789,089 + NIAGMN_24540 0.12 +1.1
4,789,090 - NIAGMN_24540 0.12 +1.8
4,789,090 - NIAGMN_24540 0.12 +0.7
4,789,158 + NIAGMN_24540 0.16 -0.4
4,789,158 + NIAGMN_24540 0.16 -1.8
4,789,273 + NIAGMN_24540 0.22 -1.2
4,789,273 + NIAGMN_24540 0.22 -0.4
4,789,353 - NIAGMN_24540 0.26 -0.6

Or see this region's nucleotide sequence