Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24275

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabF and pabC are separated by 119 nucleotidespabC and yceG are separated by 2 nucleotidesyceG and tmk overlap by 11 nucleotidestmk and holB overlap by 4 nucleotides NIAGMN_24265: fabF - beta-ketoacyl-ACP synthase II, at 4,744,776 to 4,746,017 fabF NIAGMN_24270: pabC - aminodeoxychorismate lyase, at 4,746,137 to 4,746,946 pabC NIAGMN_24275: yceG - cell division protein YceG, at 4,746,949 to 4,747,971 yceG NIAGMN_24280: tmk - dTMP kinase, at 4,747,961 to 4,748,602 tmk NIAGMN_24285: holB - DNA polymerase III subunit delta', at 4,748,599 to 4,749,603 holB Position (kb) 4746 4747 4748Strain fitness (log2 ratio) -1 0 1at 4746.038 kb on + strandat 4746.038 kb on + strandat 4746.038 kb on + strandat 4746.908 kb on + strandat 4747.372 kb on + strand, within yceGat 4747.450 kb on + strand, within yceGat 4747.462 kb on - strand, within yceGat 4747.759 kb on + strand, within yceGat 4747.759 kb on + strand, within yceGat 4747.799 kb on + strand, within yceGat 4747.861 kb on + strand, within yceG

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,746,038 + +0.2
4,746,038 + -1.5
4,746,038 + +0.3
4,746,908 + -0.2
4,747,372 + yceG NIAGMN_24275 0.41 +1.6
4,747,450 + yceG NIAGMN_24275 0.49 +0.5
4,747,462 - yceG NIAGMN_24275 0.50 -0.6
4,747,759 + yceG NIAGMN_24275 0.79 -0.1
4,747,759 + yceG NIAGMN_24275 0.79 +0.9
4,747,799 + yceG NIAGMN_24275 0.83 -0.1
4,747,861 + yceG NIAGMN_24275 0.89 +0.5

Or see this region's nucleotide sequence