Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24265

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfabG and acpP are separated by 210 nucleotidesacpP and fabF are separated by 87 nucleotidesfabF and pabC are separated by 119 nucleotidespabC and yceG are separated by 2 nucleotides NIAGMN_24255: fabG - 3-oxoacyl-ACP reductase FabG, at 4,743,507 to 4,744,241 fabG NIAGMN_24260: acpP - acyl carrier protein, at 4,744,452 to 4,744,688 acpP NIAGMN_24265: fabF - beta-ketoacyl-ACP synthase II, at 4,744,776 to 4,746,017 fabF NIAGMN_24270: pabC - aminodeoxychorismate lyase, at 4,746,137 to 4,746,946 pabC NIAGMN_24275: yceG - cell division protein YceG, at 4,746,949 to 4,747,971 yceG Position (kb) 4744 4745 4746 4747Strain fitness (log2 ratio) -1 0 1 2at 4744.296 kb on + strandat 4744.296 kb on + strandat 4744.743 kb on + strandat 4744.792 kb on + strandat 4745.696 kb on + strand, within fabFat 4746.038 kb on + strandat 4746.038 kb on + strandat 4746.038 kb on + strandat 4746.908 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,744,296 + +0.5
4,744,296 + -0.4
4,744,743 + +1.6
4,744,792 + -0.5
4,745,696 + fabF NIAGMN_24265 0.74 +1.8
4,746,038 + +0.2
4,746,038 + -1.5
4,746,038 + +0.3
4,746,908 + -0.2

Or see this region's nucleotide sequence